View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624-INSERTION-4 (Length: 535)
Name: NF1624-INSERTION-4
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624-INSERTION-4 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 5280964 - 5280705
Alignment:
| Q |
8 |
atttattcattgtcgacaactaaatatgagcaaaatcgcctaaatgttgacgtaatatcgatcactaaatataaaatttcccgacaagacaggatttatt |
107 |
Q |
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| T |
5280964 |
atttattcattgtcgaccactaaatatgagcaaaatcgtctaaatgttgacgtaatatcgagcactaaatataaaattttccgacaagacaggatttgtt |
5280865 |
T |
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| Q |
108 |
atgtagaaataaatggtggatggtttgaatcaatgattgttaataatctattatgttttttatattgatcctaactcacctaaatgaaatcgacttgcaa |
207 |
Q |
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| T |
5280864 |
ctgtagaaataaatggtggatggtctgaatcaatgattgttaataatctattatgttttttatattgatcctaactcacctaaatgaaatcgacttgcaa |
5280765 |
T |
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| Q |
208 |
ggtgagagatgtccctaattatcgagagataaaaaaggtgagatgtgatgctatttttgt |
267 |
Q |
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| T |
5280764 |
ggtgagagatgtccctaattatcgagagataaaaaaggtgagatgtgatgctatttttgt |
5280705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 267 - 528
Target Start/End: Complemental strand, 5280650 - 5280389
Alignment:
| Q |
267 |
tccaactgagttaagctcacgaggatgagatgtgatactctttataaactcatttaaaatcttattttatatagtcaggatttcatcatttgccaatcta |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280650 |
tccaactgagttaagctcacgaggatgagatgtgatactctttataaactcatttcagatcttattttatatagtcaggatttcatcatttgccaatcta |
5280551 |
T |
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| Q |
367 |
actaacccttctaattgactcaacccttgtctcatcatataccttttatattgtatttataaaagttacaagattgttgnnnnnnnngttgataaatata |
466 |
Q |
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| T |
5280550 |
actaacccttctaattgactcaacccttgtctcatcatataccttttatattgtatttataaaagttacaagattgttgttttttttgttgataaatata |
5280451 |
T |
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| Q |
467 |
tgaattttgttaattacagattgaaaggtattattgataaatacagtcgaaataaataacat |
528 |
Q |
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| T |
5280450 |
tgatttttgttaattacagattgaaaggtattattgataaatacagtcgaaataaataacat |
5280389 |
T |
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