View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624-INSERTION-6 (Length: 477)
Name: NF1624-INSERTION-6
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624-INSERTION-6 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 448121 - 447876
Alignment:
| Q |
7 |
agatctttcatacatattttatttgaatcagtatataacatacaagttcaaccgcaaaagaacaacaaagaagccagagaaaaaaggaaacaccaataca |
106 |
Q |
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| T |
448121 |
agatctttcatacatattttatttgaatcagtatataacatacaagttcaaccgcaaaagaacaacaaagaagccagagaaaaaaggaaacaccaataca |
448022 |
T |
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| Q |
107 |
aatttctagagatacaaactttgaatattcacagtttcaagagagccagagcaaataatacttaatatttgaatggattaattccttgacgaaaatgagg |
206 |
Q |
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| T |
448021 |
aatttctagagatacaaactttgaatattcacagtttcaagagagccagagcaaataatacttaatatttgaatggattaattccttgacgaaaatgagg |
447922 |
T |
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| Q |
207 |
aaatctctctgtaaagggaggattagatgtagcaacaattataaaa |
252 |
Q |
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| T |
447921 |
aaatctctctgtaaagggaggattagatgtagcaacaattataaaa |
447876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 343 - 477
Target Start/End: Complemental strand, 447828 - 447696
Alignment:
| Q |
343 |
ttgtcaacacaattcaaactcttccttttttgtgtttttactatcttcaattagtatcagatttcagtctatttta-taaccacttttatcgttcaatat |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| |
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| T |
447828 |
ttgtcaacacaattcaaactcttccttttttgtgtttttactatcttcaattagtatcagatttcagtctcttttattaaccac-tttatcgttctatat |
447730 |
T |
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| Q |
442 |
tagggtaatcatagggaaagaatccaaattatactc |
477 |
Q |
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| T |
447729 |
ta-ggtaatcataggg-aagaatcaaaattatactc |
447696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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