View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_10 (Length: 559)
Name: NF16240_high_10
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 96 - 542
Target Start/End: Complemental strand, 45520111 - 45519684
Alignment:
| Q |
96 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaactaatgatggagggggtgcagtttaaatc |
195 |
Q |
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| T |
45520111 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaacgaatgatggagggggtgcagtttaaatc |
45520012 |
T |
|
| Q |
196 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagagtagctcatttaaattataccaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
45520011 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagaggagttcatttaaattatacca- |
45519913 |
T |
|
| Q |
296 |
ctgatttgtacttgtagcatactaatt-aataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
394 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45519912 |
-------------------tactaatttaataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
45519832 |
T |
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| Q |
395 |
ttttcagccaccaccattcatcaactctttgctacatttttggatacaaattcattggattctagcaccccaaaatatattcattgaactcttccctaat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45519831 |
ttttcagccaccaccattcatcaactctttgctacatttttggatacaaattcattggattctagcaccccaaaatatattcattgaactcttccctaat |
45519732 |
T |
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| Q |
495 |
tatatataggttcaataaataaataaaatctccgttttagggataaat |
542 |
Q |
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| T |
45519731 |
tatatataggttcaataaataaataaaatctccgttttagggataaat |
45519684 |
T |
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