View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_11 (Length: 519)
Name: NF16240_high_11
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 40683310 - 40683033
Alignment:
| Q |
8 |
tgagatgaagctgaaggtagactcgtgtgagcctcacgtgactaacaacatttatcgtagccgccaagaacatggaagggttgaattcggtctcaaattg |
107 |
Q |
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| T |
40683310 |
tgagatgaagctgaaggtagactcgtgtgagcctcacgtgactaacaacatttatcgtagccgccgagaacatggaagggttgaattcggtctcaaattg |
40683211 |
T |
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| Q |
108 |
ttcacttccatccagtttaagaaagatatctatgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgcaaaatgtct |
207 |
Q |
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| T |
40683210 |
ttcacttccatccagtttaagaaagatatctttgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgcaaaatgtct |
40683111 |
T |
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| Q |
208 |
acaatattacaacctcagctgggattcttctgcaagatgttacatgtacaagatcatgaattgtgtgcagtttgctta |
285 |
Q |
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| T |
40683110 |
acaatattacaacctcagctgggattcttctgcaaggtgttacatgtacaagatcatgaattgtgtgcagtgtgctta |
40683033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 327 - 502
Target Start/End: Complemental strand, 40682993 - 40682818
Alignment:
| Q |
327 |
tcaagatttttgtacatatcatgtgtgtgagagtttttgcaactctggaaaacaatctgatgtaattccaatattaattaagtgtgtattatattacagt |
426 |
Q |
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| T |
40682993 |
tcaagattttagtacatatcatgtgtgtgagagttcttgtaactctggaaaacaatctgatgtaattccaatattaattaagtgtgtattatattacagt |
40682894 |
T |
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| Q |
427 |
ggtcggccttgtttaagtttgtttcttttatatgaagggattaatatgaaaaagtttataataaattacctctttt |
502 |
Q |
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| T |
40682893 |
ggtcggccttgtttaagtttgtttcttttatatgaagggattaatatgaaaaagtttataataaattacctctttt |
40682818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 40672923 - 40672786
Alignment:
| Q |
75 |
gaacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagatatctatgaatccaactggataactttgaaggttgtttgct |
174 |
Q |
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| T |
40672923 |
gaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgct |
40672824 |
T |
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| Q |
175 |
acccacttagctttgttatttcgcaaaatgtctacaat |
212 |
Q |
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| T |
40672823 |
acccactaagctttggaatttcgaaaaatgtctacaat |
40672786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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