View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_high_15 (Length: 500)
Name: NF16240_high_15
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 28216526 - 28216013
Alignment:
| Q |
1 |
aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28216526 |
aaagtataaatacgctcaatgggcaatccgcagcaaa-ggatatggaaattgaggatttgaagttagatactgcctttcgctatcaagatggttttgata |
28216428 |
T |
|
| Q |
101 |
aggccatagaacaagttcatgtcctatttccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagtttttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28216427 |
aggccatagaacaagttcatgtcctatttccatcgttggatttgtcagaggctgacgctatgaagtccgtggttgatggaaaactagta-taagtttttt |
28216329 |
T |
|
| Q |
201 |
ccatttagtcccgaggctttttgatgttgtactactaacattttgatgtagggaagtgctaggaacactctttttaatactctcttaaatactcactttt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28216328 |
ccatttagtctcgaggctttttgatgttgtactactaacattttgatgtagggaagtgctgtgaacactttttttaatactctcttaaatactcactttt |
28216229 |
T |
|
| Q |
301 |
ttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgttagagaa- |
399 |
Q |
| |
|
||||||||| |||||||||||||| || || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216228 |
ttatttggtgaaatcaatgttggtcttacac-tttggaataggtctcacatgaagtggtgggactcatggattccactcaataaataagtgttagagaaa |
28216130 |
T |
|
| Q |
400 |
-cgttgaaaagaga--attgct-------------------aacctatgctgacaaagttttgaatacctttacattttgatgttatgcgttttattatg |
477 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28216129 |
gcgttgaaaagagagtgttgctaacatatattttggaatgtaacctatgctgacaaagttttgaatacctttacattttgatgttatacgttttattata |
28216030 |
T |
|
| Q |
478 |
ctgccttttcttctcac |
494 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
28216029 |
ctgccttttcttttcac |
28216013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 28232506 - 28232116
Alignment:
| Q |
1 |
aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgata |
100 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
28232506 |
aaagtatggatacgttcaaggggcaatccgcagcaaa-ggatatggaaattgaggatttgaaggtagacgctgccttgcgctatcaagatggttttgata |
28232408 |
T |
|
| Q |
101 |
aggccatagaacaagttcatgtcctatttccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagtttttt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||| || |||||||| ||||||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
28232407 |
aggccatagaacaagttcacatcctatttccatcatttgatttttcggaggctgacgctatgaagtctgtggttgatggaaaactagta-taag-tttta |
28232310 |
T |
|
| Q |
201 |
ccatttagtcccgaggctttttgatgttgtactactaacattttgatgtagggaagtgctaggaacactctttttaat-actctcttaaatactcacttt |
299 |
Q |
| |
|
|||||||||| ||| |||||| ||||| |||||||||||||||||| |||| ||||||| || |||| ||||||| | || ||||| || ||||||| | |
|
|
| T |
28232309 |
ccatttagtctcgaagcttttggatgtagtactactaacattttgacgtagagaagtgcaagaaacattcttttttttaacactctttaacactcactct |
28232210 |
T |
|
| Q |
300 |
tttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgtta |
394 |
Q |
| |
|
|||||| || ||||||||||||| | ||||| |||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||| |
|
|
| T |
28232209 |
tttattaggcgaaatcaatgttgg-cctacactttgaaaataggtctcacataaagtggtgagactcgtggattccaccgaataaacgagtgtta |
28232116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 28237398 - 28237201
Alignment:
| Q |
1 |
aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgata |
100 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||| |||| ||||||||| ||| ||||||||| | |
|
|
| T |
28237398 |
aaagcatagatacgctcaaggggcaatccgcag-aaaaggatatggaaattgaggagttgaagatagacgctgcatttcgctatcaaggtggttttgaca |
28237300 |
T |
|
| Q |
101 |
aggccatagaacaagttcatgtcctatttccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagtttttt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
28237299 |
aggccatagaacaagttcacatcctatttccgttgtttgatttgtcggaggctgacgctatgaagtctgtggttgatggaaaactagta-taagtttttt |
28237201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 28237120 - 28237058
Alignment:
| Q |
336 |
gaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgttagaga |
398 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
28237120 |
gaaacaggtctcacataaagtgttgggactcatagattccaccaaataaatgagtgttagaga |
28237058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 18716853 - 18716790
Alignment:
| Q |
330 |
acttttgaaataggtctcacataaagtggtgggactc--atggattccactcaataaataagtg |
391 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
18716853 |
actttagaaataggtcccacataaagtggtgagactcatatggattccacccaataaataagtg |
18716790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 28216578 - 28216528
Alignment:
| Q |
12 |
acgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaag |
63 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28216578 |
acgctcaaggggcaatccgcagcgaa-ggatatggaaattgaggatttgaag |
28216528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 28237046 - 28237006
Alignment:
| Q |
436 |
ttttgaatacctttacattttgatgttatgcgttttattat |
476 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
28237046 |
ttttgaatacctttacatttcgatgttatgtgttttattat |
28237006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 484
Target Start/End: Complemental strand, 28232066 - 28231999
Alignment:
| Q |
418 |
taacctatgctgacaaag-ttttgaatacctttacattttgatgttatgcgttttattatgctgcctt |
484 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||| |||| ||||||||||||||| ||||||| |
|
|
| T |
28232066 |
taacctatgctgacaatgcttttaaatacctttgcattctgatcttatgcgttttattacactgcctt |
28231999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 17354563 - 17354636
Alignment:
| Q |
291 |
actcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggac |
364 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
17354563 |
actcacttttttattgggtaaaatcaatgtaggacctacactttggaaatagaacccacataaagtggtgggac |
17354636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 45909623 - 45909571
Alignment:
| Q |
268 |
ctctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgt |
320 |
Q |
| |
|
||||||| |||||||||| || ||||||| ||||||| |||||||||||||| |
|
|
| T |
45909623 |
ctcttttgaatactctctctaacactcactcttttattgggtaaaatcaatgt |
45909571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 49738924 - 49739033
Alignment:
| Q |
255 |
agtgctaggaacactctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaa |
354 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||||| ||||||||||| ||||| |||| ||| | ||||| ||||| |||| ||||||| |
|
|
| T |
49738924 |
agtgctaggaacactcttttcaactttctctctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataat |
49739023 |
T |
|
| Q |
355 |
gtggtgggac |
364 |
Q |
| |
|
|||||||||| |
|
|
| T |
49739024 |
gtggtgggac |
49739033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 34818366 - 34818301
Alignment:
| Q |
257 |
tgctaggaaca--ctctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgt |
320 |
Q |
| |
|
||||||||||| ||||||| | ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34818366 |
tgctaggaacattctcttttgagcactctctctaacactcacttttttatttggtaaaatcaatgt |
34818301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University