View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_19 (Length: 474)
Name: NF16240_high_19
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 50970247 - 50969801
Alignment:
| Q |
11 |
catcatcaatctgcttatgtagccttgtttttatagattcttataaatcaatccccatgctcagagacggaaccaaattttcttttactaagggtgtgga |
110 |
Q |
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| T |
50970247 |
catcttcaatctgcttatgtagccttgtttttatagattctaataaatcaatccccatgctcagagacggaaccaaattttcttttactaagggtgtgga |
50970148 |
T |
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| Q |
111 |
aaaccaaaggaaaattctattgtgacaataccacgacagggcactgtggcggcggctggaaatgaagtcataatctcatattttgcattgccataatgct |
210 |
Q |
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| T |
50970147 |
aaaccaaaggaaaattctattgtgacaataccacgacagggcactgtggcggcggctggaaatgaagtcataatctcatattttgcattgccataatgct |
50970048 |
T |
|
| Q |
211 |
tttcttttgtcatgtaagttctcctggatgagttatgattccgttgtagtttccatgataaatgtttttctttaagtcaattgaaagaaatatttaaatc |
310 |
Q |
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| T |
50970047 |
tttcttttgtcatgtaagttctcctggatgagttatgattccgttgtagtttccatgataaatgtttttctttaagtcaattgaaagaaatatttaaatc |
50969948 |
T |
|
| Q |
311 |
aaagagaatatttctctttgatttaaaacattggataaatgttttacttacaataaatactttccttcaaggtcacttgctctgactcttaaatcgaaga |
410 |
Q |
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| T |
50969947 |
aaagagaatatttctctttgatttaaaacattggataaatgttttacttacaataaatactttccttcaaggtcacttgctcagactcttaaatcgaaga |
50969848 |
T |
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| Q |
411 |
gaatgcttgaaatagacagttggttttcctttacaactgtactttct |
457 |
Q |
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| T |
50969847 |
gaatgcttgaaatagacagttggttttcctttacaactgtactttct |
50969801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 50968219 - 50968165
Alignment:
| Q |
11 |
catcatcaatctgcttatgtagccttgtttttatagattcttataaatcaatccc |
65 |
Q |
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|||| ||||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
50968219 |
catcttcaatcttcttcggtagccttgtttttatagattcttataaattaatccc |
50968165 |
T |
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