View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_24 (Length: 441)
Name: NF16240_high_24
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 7969176 - 7969616
Alignment:
| Q |
1 |
gaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969176 |
gaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttcc |
7969275 |
T |
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| Q |
101 |
aacagcaattcaattatatgatcttcaagataaacttggtttaggacaaccaagtaaagtaattgattggttacttgaagcaacaaaattagacattgat |
200 |
Q |
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| T |
7969276 |
aacagcaattcaattatatgatcttcaagataaacttggtttaggacaaccaagtaaagtaattgattggttacttgaagcaacaaaattagacattgat |
7969375 |
T |
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| Q |
201 |
aaactccctccacttcaatttcctcaaagcttttcacaatttcatcctcttcattcacaaaccctacttccttttcatgatcaatcaagtaatattgctt |
300 |
Q |
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| T |
7969376 |
aaactccctccacttcaatttcctcaaagcttttcacaatttcatcctcttcattcacaaaccctacttccttttcatgatcaatcaagtaatattgctt |
7969475 |
T |
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| Q |
301 |
ctcatgaactttctcttggtcctttatatgatcctaattccacatttgttggaattcaaaatcttatggcaaggtcaaaattttgggacatagattcaag |
400 |
Q |
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| T |
7969476 |
ctcatgaactttctcttggtcctttatatgatcctaattccacatttgttggaattcaaaatcttatggcaaggtcaaaattttgggacatagattcaag |
7969575 |
T |
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| Q |
401 |
gactaaaggtaaagaagctgaaagagagtactttagtgaaa |
441 |
Q |
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| T |
7969576 |
gactaaaggtaaagaagttgaaagagagtactttagtgaaa |
7969616 |
T |
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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4516192 - 4516323
Alignment:
| Q |
1 |
gaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttcc |
100 |
Q |
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||||||| |||||||||||| | ||||| || || ||||| ||||||||||| || ||||||||||| || ||||||||||| ||||||||||||| || |
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| T |
4516192 |
gaattgtaagagtatcaagagcttttggtggaaaggatagacatagcaaagtatgcacaataagaggattgagagatagaagagtaaggctttcagtacc |
4516291 |
T |
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| Q |
101 |
aacagcaattcaattatatgatcttcaagata |
132 |
Q |
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| T |
4516292 |
aacagctattcaactttatgatcttcaagata |
4516323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 45588960 - 45589162
Alignment:
| Q |
27 |
ggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttccaacagcaattcaattatatgatcttc |
126 |
Q |
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||||| ||||| || || ||||||||||| ||||| ||||| |||||||| | ||||| ||| | || || |||||||||||||| |||||||||||| |
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| T |
45588960 |
ggaggaaaagacagacacagcaaagtttgcacaattagaggattaagagaccgtaggattaggttgtctgtaccaacagcaattcagctatatgatcttc |
45589059 |
T |
|
| Q |
127 |
aagataaacttggtttaggacaaccaagtaaagtaattgattggttacttgaagcaacaaaattagacattgataaactccctccacttcaatttcctca |
226 |
Q |
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|||||| |||||||||| | ||||| |||||||| |||| |||||| |||||||||| ||| || ||||||||| | || |||||| | ||||||| |
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| T |
45589060 |
aagatagacttggtttaagtcaacctagtaaagttgttgaatggttaattgaagcaactcaatctgatattgataaattaccaccacttgatattcctca |
45589159 |
T |
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| Q |
227 |
aag |
229 |
Q |
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||| |
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| T |
45589160 |
aag |
45589162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 5012051 - 5012150
Alignment:
| Q |
33 |
aaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttccaacagcaattcaattatatgatcttcaagata |
132 |
Q |
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|||||||| ||||||||||| | ||||||| ||| |||||||||||||| ||||||||||| | | |||||||||||| | |||||||||||||||| |
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| T |
5012051 |
aaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggctttcaatccaaacagcaattcacctctatgatcttcaagata |
5012150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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