View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_25 (Length: 433)
Name: NF16240_high_25
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38072755 - 38072545
Alignment:
| Q |
1 |
cattcctttcataccttggctagctagaacaagttattttccactcatctcaagatattatttcatatgtgttgtacctttgttatatcattttccattc |
100 |
Q |
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| T |
38072755 |
cattcctttcataccttggctagctagaacaagttattttccactcatctcaagatattatttcatatgtgttgtacctttgttatgtcattttccattc |
38072656 |
T |
|
| Q |
101 |
atcttagcgatttagagggggtttattgtggctgctttgaagctcttctggattttgatgctgttgaagttttggataaaagtttagcaattaaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38072655 |
atcttagcgatttagagggggtttattgtggccgctttgaagctcttctggattttgatgctgttgaagttttggataaaagtttagcgattaaattttc |
38072556 |
T |
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| Q |
201 |
tctagatatga |
211 |
Q |
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||||||||||| |
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| T |
38072555 |
tctagatatga |
38072545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 421
Target Start/End: Complemental strand, 38072536 - 38072383
Alignment:
| Q |
276 |
tcttacaagtaatcaaacctactgaagtgag--------tgactattggcatcatattttccgtattcattcctttttgtttactcatataattacatgt |
367 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38072536 |
tcttccaagtaatcaaacctactgaagtgaggtgcttggtgactattggcatcatattttccgtattcattcctttttgtttagtcatataattacatgt |
38072437 |
T |
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| Q |
368 |
accaatattgtgactcatcatttatctaaatttgctctctcttctactcatatt |
421 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38072436 |
accaatattatgactcatcatttatctaaatttgctctctcttttactcatatt |
38072383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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