View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_high_3 (Length: 734)
Name: NF16240_high_3
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 688; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Complemental strand, 36288408 - 36287690
Alignment:
| Q |
1 |
atcatattctatatcgaaattgataattgaatactaatgtattggtgttgcgagctacctgaataacttcatctaggagatcaacttccagaacaggagg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288408 |
atcatattctatattgaaattgataattgaatactaatgtattagtgttgcgagctacctgaataacttcatctaggagatcaacttccagaacaggagg |
36288309 |
T |
|
| Q |
101 |
aatgataccagcaccgatcccttggattcgatgattgcctttgaaatgtttacaaatggtaaaagcaatcagtaaacagcctcaagtggctgatcaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288308 |
aatgataccagcaccgatcccttggattcgatgattgcctttgaaatgtttacaaatggtaaaagcaatcagtaaacagcctcaagtggctgatcaagca |
36288209 |
T |
|
| Q |
201 |
cttgcttaaatattaaagaatgaaattcggacaattatatatgacagagaaacaaaaaactaaatataacaattcaaatgaagaacaaaaatctatagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288208 |
cttgcttaaatattaaagaatgaaattcggacaattatatttgacagagaaacaaaaaactaaatataacaattcaaatgaagaacaaaaatctatagtc |
36288109 |
T |
|
| Q |
301 |
tctagactactggaaaatttggacattttatattgtgaatttgtgatacaacgacattcacatacactgcaattagcattagaagactgaagaccagaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288108 |
tctagactactggaaaatttggacattttatattgtgaatttgtgatacaacgacattcacatacactgcaattagcattagaagactgaagaccagaaa |
36288009 |
T |
|
| Q |
401 |
gaaatactcagaatcatataagcacctgactttcctccattcagaactggactttcagttggttcaacaccatacacctatagggggaaagcaacataaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288008 |
gaaatactcagaatcatataagcacctgactttcctccattcagaactggactttcagttggttcaacaccatacacctatagggggaaagcaacataaa |
36287909 |
T |
|
| Q |
501 |
tcataaaagttagcataaatgtaaatgaagagtaagaaaacttgttaactattcataccttgatctctgggtttttctccttaaggaacttcccaacacc |
600 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287908 |
tcat-aaagttagcataaatgtaaataaagagtaagaaaacttgttaactattcataccttgatctctgggtttttctccttaaggaacttcccaacacc |
36287810 |
T |
|
| Q |
601 |
tgttattgttcctccagttcctatccctgcaaccaaagcatcaattctccctccagtgtctctccaaatctcagggctagtggtctcataatgaatctaa |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36287809 |
tgttattgttcctccagttcctatccctgcaaccaaagcatcaattctccctccagtgtctctccaaatctcagggccagtggtctcataatgaatctaa |
36287710 |
T |
|
| Q |
701 |
aagtaatgaccaattaattg |
720 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
36287709 |
aagtaacgaccaattaattg |
36287690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 389 - 702
Target Start/End: Complemental strand, 36282084 - 36281768
Alignment:
| Q |
389 |
gaagaccagaaagaaatactcagaatcatataagcacctgactttcctccattcagaactggactttcagttggttcaacaccatacacctataggggga |
488 |
Q |
| |
|
||||||||||||||||||| || ||||||| || |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
36282084 |
gaagaccagaaagaaatacacaaaatcataaaatcacctggctttcctccattcagaactgcactttcagttggttctacaccatacacctataagggga |
36281985 |
T |
|
| Q |
489 |
aa-gcaacataaatcataaaagttagcataaatgtaaatg--aagagtaagaaaacttgttaac-tattcataccttgatctctgggtttttctccttaa |
584 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||| ||||| || |||||||||||||||| || ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
36281984 |
aaagcaacataaatcataaa-gttggcataaatataaatactaatagtaagaaaacttgttcacatattcataccttgatatctggatttttctccttaa |
36281886 |
T |
|
| Q |
585 |
ggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaattctccctccagtgtctctccaaatctcagggctagtggt |
684 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
36281885 |
ggaacttcccagtacctgttactgttcccccagttcctattcctgcaaccaaagcatcaactctccctccagagtctttccaaatctcagggccagtggt |
36281786 |
T |
|
| Q |
685 |
ctcataatgaatctaaaa |
702 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
36281785 |
ctcgtaatgaatctaaaa |
36281768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 557 - 702
Target Start/End: Complemental strand, 36293398 - 36293253
Alignment:
| Q |
557 |
accttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaattctccctccag |
656 |
Q |
| |
|
|||||||| ||| |||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36293398 |
accttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatcaattctctctccag |
36293299 |
T |
|
| Q |
657 |
tgtctctccaaatctcagggctagtggtctcataatgaatctaaaa |
702 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
36293298 |
tgtctctccaaatctcagggcctgtggtctcataatgagtctaaaa |
36293253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 36283042 - 36282888
Alignment:
| Q |
23 |
ataattgaatactaatgtattggtgttgcgagctacctgaataacttcatctaggagatcaacttccagaacaggaggaatgataccagcaccgatccct |
122 |
Q |
| |
|
|||||||||| | |||||||| || ||| |||| ||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||| |
|
|
| T |
36283042 |
ataattgaatgccaatgtattagtattgagagcaacctgaataacttcatctaggagatcaacttccaggatagggggaacgataccagcaccgatccct |
36282943 |
T |
|
| Q |
123 |
tggattcgatgattgcctttgaaatgtttacaaatggtaaaagcaatcagtaaac |
177 |
Q |
| |
|
|||||| | || ||||||||||||||| | ||||| | |||| |||||||||||| |
|
|
| T |
36282942 |
tggattaggtgtttgcctttgaaatgtgttcaaatagaaaaatcaatcagtaaac |
36282888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 36293828 - 36293702
Alignment:
| Q |
21 |
tgataattgaatactaatgtattggtgttgcgagctacctgaataacttcatctaggagatcaacttccagaacaggaggaatgataccagcaccgatcc |
120 |
Q |
| |
|
|||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| || |||| |||||||| |
|
|
| T |
36293828 |
tgataattgaataccagtgtattagtgttgcaagctacctgaataacttcatctaggagatcaagatccaggacagggggaacgacgccagtaccgatcc |
36293729 |
T |
|
| Q |
121 |
cttggattcgatgattgcctttgaaat |
147 |
Q |
| |
|
|||||| | | || ||||||||||||| |
|
|
| T |
36293728 |
cttggactaggtgtttgcctttgaaat |
36293702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 424 - 507
Target Start/End: Complemental strand, 36293557 - 36293474
Alignment:
| Q |
424 |
acctgactttcctccattcagaactggactttcagttggttcaacaccatacacctatagggggaaagcaacataaatcataaa |
507 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
36293557 |
acctggctttcctccattcagaattgcactttcagttggttctacaccatacacctagggggggaaatttacatagatcataaa |
36293474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University