View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_32 (Length: 372)
Name: NF16240_high_32
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 36 - 360
Target Start/End: Complemental strand, 40088077 - 40087754
Alignment:
| Q |
36 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
135 |
Q |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
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| Q |
136 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
235 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
40087879 |
T |
|
| Q |
236 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgatgtttatttgctcaagtaatccagtcttagacaatatat |
335 |
Q |
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| T |
40087878 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgatatttatttgctcaagtaatccagtctttgacaatatat |
40087779 |
T |
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| Q |
336 |
catccttcgaaatacccacaggttc |
360 |
Q |
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||||||||||||||||||||||||| |
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| T |
40087778 |
catccttcgaaatacccacaggttc |
40087754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 40062268 - 40061907
Alignment:
| Q |
1 |
tcatttgagtttcaataacacagggtctttgagagtttcaaaatataaaaaccata---tccttgtgaataaattacctgcaagcttgccgtttatgaaa |
97 |
Q |
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| T |
40062268 |
tcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataaaattctagtgaataa-ttacctgcaagctttccgtttacgaaa |
40062170 |
T |
|
| Q |
98 |
gcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttat |
197 |
Q |
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| T |
40062169 |
gcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatcatccttaagatcaacgcttcaaaagaatataatagaagtgttat |
40062070 |
T |
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| Q |
198 |
cgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
297 |
Q |
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| T |
40062069 |
cgagaagtacagaatcatcgttcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagcggtgat |
40061970 |
T |
|
| Q |
298 |
gtttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
360 |
Q |
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| T |
40061969 |
atttatttgctcaagtaatccagtttttgaaaatatatcatccttcgaaatacccacaggttc |
40061907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 71 - 360
Target Start/End: Complemental strand, 40080330 - 40080042
Alignment:
| Q |
71 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
170 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
|
| Q |
171 |
ttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtacca |
270 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtacataatcatcggtcaaagcaaatatctttcaaatttggaggcttgtgtaccttaatgagtacca |
40080132 |
T |
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| Q |
271 |
caagtagtcacttctatcagctgtgatgtttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
360 |
Q |
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| T |
40080131 |
caaataatcacttctatcagctgtggtatttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
40080042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40092918 - 40092880
Alignment:
| Q |
1 |
tcatttgagtttcaataacacagggtctttgagagtttc |
39 |
Q |
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| T |
40092918 |
tcatttgagtttcaataacacaggctctttgagactttc |
40092880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 22013633 - 22013690
Alignment:
| Q |
252 |
tataccttaatgagtaccacaagtagtcacttctatcagctgtgatgtttatttgctc |
309 |
Q |
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| T |
22013633 |
tataccttaatgagtaccataagtagtcacttctatcagccgtcgtgtttatttgctc |
22013690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
71 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
142 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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