View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_35 (Length: 362)
Name: NF16240_high_35
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 47949769 - 47949435
Alignment:
| Q |
10 |
ataatactcaacaagccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatacatgaccaaccatcttcacacattgtcatttataaac |
109 |
Q |
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| T |
47949769 |
ataatactcaacaagccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatacatgaccaaccatcttcacacattgtcatttataatc |
47949670 |
T |
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| Q |
110 |
aaacttcatagttttagcataggtccaccatgaatttatattttatagttttagtgtgataaacaaaagttttttaattgcaatttggtgcaagatcaat |
209 |
Q |
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| T |
47949669 |
aaatttcatagttttagcataggtccaccatgaatttatattttatagttttagtgtgataaacaaaagttttttaattgcaatttggtgcaagatcaat |
47949570 |
T |
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| Q |
210 |
ttagcacaggaccaattcaatgcga-nnnnnnnnatcaaacattggtagtttttccattttatattatcaaatcaaataggtgtaattttcaaataattt |
308 |
Q |
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| T |
47949569 |
ttagcacaggaccaattcaatgcgatttttttttatcaaacattggtagtttttccattt--tattatcaaatcaaataggtgtaattttcaaataattt |
47949472 |
T |
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| Q |
309 |
accaaacaaaggtaagtggtcgctgccaccaaccaac |
345 |
Q |
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| T |
47949471 |
accaaacaaaggtaagtggtcgctgccaccaaccaac |
47949435 |
T |
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