View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_38 (Length: 349)
Name: NF16240_high_38
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 14271902 - 14271586
Alignment:
| Q |
15 |
tatgtggacaagcagtaggagctggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgatactattttccatggcatttccactatgcct |
114 |
Q |
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| T |
14271902 |
tatgtggacaagcagtaggagcaggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgatactattttccatggcatttccactatgcct |
14271803 |
T |
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| Q |
115 |
tttatacatcttcgccggatccgttctaaaattcataggacaaacaactgaaatatccgaggctgcaggaacatttgctttatatatgattccacaatta |
214 |
Q |
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| T |
14271802 |
tttatacatcttcgccggatccattctaaaattcataggacaaacaactgaaatatccgaggccgcaggaacattcgctttatatatgattccacaatta |
14271703 |
T |
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| Q |
215 |
tttgcttacgcgctgaattttcctgtcgcgaaatttctacaagcgcaaagcatggtgattgtcatcgcggttatatcgggagtggcaatggtgttgcatc |
314 |
Q |
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| T |
14271702 |
tttgcttacgcgctgaattttcctgtcgcgaaatttctacaagcgcaaagcatggtgattgtcatcgcggttatatcgggagtggcaatggtgttgcatc |
14271603 |
T |
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| Q |
315 |
cggtgtttagttggttg |
331 |
Q |
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| T |
14271602 |
cggtgtttagttggttg |
14271586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 29112224 - 29112155
Alignment:
| Q |
15 |
tatgtggacaagcagtaggagctggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgat |
84 |
Q |
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||||||||||||| | ||||| || ||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
29112224 |
tatgtggacaagctttcggagcagggaaactagacatgttaggaatatacatgcaaagatcatggttgat |
29112155 |
T |
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