View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_high_41 (Length: 341)
Name: NF16240_high_41
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 23105910 - 23105763
Alignment:
| Q |
105 |
gttggcataagccttaattccactttcacaagctacgtgatccaacattgcttgtccatgacctgcttacaaatatgtgtgcaaagggacacaaaaaaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23105910 |
gttggcataagccttaattccactttcacaagctacgtgatccaacattgcttgtccatgacctgcttacaaatatgtgtgcaaagggacacaaaaaaca |
23105811 |
T |
|
| Q |
205 |
tgtgagtacatgatacatcatgttaaaagaataaggtttaagaagatg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23105810 |
tgtgagtacatgatacatcatgttaaaagaataaggtttaagaagatg |
23105763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 23106016 - 23105934
Alignment:
| Q |
1 |
tttttattcataagtttgcaaagcttaaaataaaacaaataacaacattagatcccaaggattgtaacataaccaacaataat |
83 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23106016 |
tttttattcataagtttgcaaagctaaaaataaaacaaataacaacattagatcccaaggattctaacataaccaacaataat |
23105934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University