View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_high_44 (Length: 327)

Name: NF16240_high_44
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_high_44
NF16240_high_44
[»] chr4 (1 HSPs)
chr4 (18-311)||(27640695-27640988)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 27640695 - 27640988
Alignment:
Q  18 cctgattttaggttgaagggtcatgagaaagaagggtatgggttatcttggagtggttttaagaatgggtatcttttgagtggttctaatgatcataaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640695 cctgattttaggttgaagggtcatgagaaagaagggtatgggttatcttggagtggttttaagaatgggtatcttttgagtggttctaatgatcataaga 27640794  T
Q  118 tttgcttgtgggatgttttaggtgcttctgaaagtaatgtgcttgatgctgttcatgtttatgaggtaatgatgagaatcaattcagtgatctttggact 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640795 tttgcttgtgggatgtttttggtgcttctgaaagtaatgtgcttgatgctgttcatgtttatgaggtaatgatgagaatcaattcagtgatctttggact 27640894  T
Q  218 tgttctgcgattaattgttgttttgatgatggaatcattgaacttttgattttgtgtttcagggacatgaaagtgttgttgaagatgtgtcttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640895 tgttctgcgattaattgttgttttgatgatggaatcattgaacttttgattttgtgtttcagggacatgaaagtgttgttgaagatgtgtcttg 27640988  T

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