View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_46 (Length: 306)
Name: NF16240_high_46
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 40093127 - 40092895
Alignment:
| Q |
23 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaat |
122 |
Q |
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| T |
40093127 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaat |
40093028 |
T |
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| Q |
123 |
tatgaacatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaatc |
222 |
Q |
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| T |
40093027 |
tatgaacatttttagaaggaacatccatcatcaactctccct-aaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaatc |
40092929 |
T |
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| Q |
223 |
aacctcaacttcatttgagtttcaataacacagg |
256 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
40092928 |
aacctcgacttcatttgagtttcaataacacagg |
40092895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 40062470 - 40062329
Alignment:
| Q |
23 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaat |
122 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
40062470 |
aggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaat |
40062371 |
T |
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| Q |
123 |
tatgaacatttttaaaaggaacatccatcatcaactctccct |
164 |
Q |
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| T |
40062370 |
tatgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 40062311 - 40062245
Alignment:
| Q |
191 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagg |
256 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacagg |
40062245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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