View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_5 (Length: 647)
Name: NF16240_high_5
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 19 - 636
Target Start/End: Original strand, 36540040 - 36540657
Alignment:
| Q |
19 |
cctatttgctccacataacataaaccactaacataatcataatcctagatattttacttcctttcattgcaaccattttagaaagttcttaggcatatct |
118 |
Q |
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| T |
36540040 |
cctatttgctccacataacataaaccactaacataatcataatcctagatattttacttcctttcattgcaaccattttagaaagttcttaggcatatct |
36540139 |
T |
|
| Q |
119 |
tagaatcagaaccgccgatacacttcaaccgacggtctataaactcatcatcgtcagctatgtcttccgagttttcgactacttcatcagtttgtagtac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540140 |
tagaatcagaaccgccgatacacttcaaccgacggtctataaactcatcatcgtcagctatgtcttccgagttttcgactacttcatcagtttgtagtac |
36540239 |
T |
|
| Q |
219 |
agacttatcatgtgtgtcttctgaggctgaggaagagacaagtgctatggttctcctaggttgtcttcaatgtcacatgtatgttttgttatccgaggct |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540240 |
ggacttatcatgtgtgtcttctgaggctgaagaagagacaagtgctatggttctcctaggttgtcttcaatgtcacatgtatgttttgttatccgaggct |
36540339 |
T |
|
| Q |
319 |
gatcccaatccaaaatgtcctaagtgtaagagtactgtcttgcttgatttccttaacaacaaacaaaataccagaaaaacaagcagctagcaagatgatg |
418 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540340 |
gatcccaatccaaaatgccctaagtgtaagagtactgtcttgcttgatttccttaacaacaaacaaaataccagaaaaacaagcagctagcaagatgatg |
36540439 |
T |
|
| Q |
419 |
atgcacaccatgtataaataattagaaagatacaaattaacatgtatttgtgctattctatttcatgttgctatttaattaattattatatatagattgt |
518 |
Q |
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| T |
36540440 |
atgcacaccatgtataaataatcagaaagatacaaattaacatgtatttgtgctattctatttcatgttgctatttaattaattattatatatagattgt |
36540539 |
T |
|
| Q |
519 |
tttnnnnnnnttaattatatatagatagttgattacattttcctcttgaatttgcttttcgtcagatttcaatgtttggaatacaaaggtaaagataacc |
618 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36540540 |
tttaaaaaaattaattatatatagatggttgattacattttcctcttgaatttgcttttcgttagatttcaatgtttggaatacaaaggtaaagataacc |
36540639 |
T |
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| Q |
619 |
atttaaatttcatttcat |
636 |
Q |
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|||||||||||||||||| |
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| T |
36540640 |
atttaaatttcatttcat |
36540657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 18904119 - 18904069
Alignment:
| Q |
326 |
atccaaaatgtcctaagtgtaagagtactgtcttgcttgatttccttaaca |
376 |
Q |
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|||| |||||||| ||||| ||||||||||| ||||||||||| ||||||| |
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| T |
18904119 |
atcccaaatgtcccaagtgcaagagtactgtgttgcttgattttcttaaca |
18904069 |
T |
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