View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_high_55 (Length: 273)

Name: NF16240_high_55
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_high_55
NF16240_high_55
[»] chr6 (14 HSPs)
chr6 (156-252)||(14017448-14017544)
chr6 (156-252)||(14027489-14027585)
chr6 (155-256)||(13943382-13943483)
chr6 (155-252)||(14087030-14087127)
chr6 (156-252)||(13872710-13872806)
chr6 (156-252)||(13890566-13890662)
chr6 (155-256)||(13860575-13860676)
chr6 (156-253)||(14049276-14049373)
chr6 (157-252)||(13470482-13470577)
chr6 (155-256)||(14112881-14112982)
chr6 (21-93)||(14112783-14112855)
chr6 (21-93)||(13470617-13470689)
chr6 (25-104)||(14049169-14049248)
chr6 (45-91)||(13943302-13943348)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 14017448 - 14017544
Alignment:
Q  156 accatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  14017448 accatgaaggttgagcataagtacatgaccagtgaggttgctgcaaccaattccataccattcgcagcaatcttctgttgtccaagatgacaacatg 14017544  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 14027489 - 14027585
Alignment:
Q  156 accatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  14027489 accatgaaggtcgagcataagtacatggccagtgatattgctgcaaccaattccataccattcgcagcaatcttctgttgtccaagatgacaacatg 14027585  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 13943382 - 13943483
Alignment:
Q  155 taccatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatgtt 254  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||    
T  13943382 taccatgaaggtcgagcataattacatgaccagtgacgttgctgcaaccaattcccttccattggcagcaatcttctgtcgtccaagatgacagcatgtt 13943481  T
Q  255 gt 256  Q
    ||    
T  13943482 gt 13943483  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 14087030 - 14087127
Alignment:
Q  155 taccatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||    
T  14087030 taccatgaaggttgagcataagtacatggccagtgaggttgttgcaaccaattcccttccattggcagcaatcttctgtcgtccaagatgacagcatg 14087127  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 13872806 - 13872710
Alignment:
Q  156 accatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | || ||||||||||||||||||    
T  13872806 accatgaagatcgagcataagtacatggccagtgaggttgctgcaacgaattccataccattggcagcaatctgccgttgtccaagatgacaacatg 13872710  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 13890662 - 13890566
Alignment:
Q  156 accatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||    
T  13890662 accatgaaggtcgagcttaagtacatgaccagtgaggttgctgcaaccaattccataccattcgcagcaatctgccgtcgtccaagatgacaacatg 13890566  T

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Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 13860676 - 13860575
Alignment:
Q  155 taccatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatgtt 254  Q
    ||||||||||||||||||||| |||||| ||||| | |||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||    
T  13860676 taccatgaaggtcgagcataattacatgaccagttacgttgctgcaaccaattcccttccattggcagcaatcttctgtcgtccaagatgacagcatgtt 13860577  T
Q  255 gt 256  Q
    ||    
T  13860576 gt 13860575  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 14049276 - 14049373
Alignment:
Q  156 accatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatgt 253  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||    
T  14049276 accatgaagatcgagcataagtacatggccagtgatattgctgcaaccaattccataccattggcagcaatcttcagttgtccaaaatgacaacatgt 14049373  T

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Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 13470577 - 13470482
Alignment:
Q  157 ccatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatg 252  Q
    |||||||||| |||||||| ||||||  ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  13470577 ccatgaaggttgagcataattacatgatcagtgaggttgctgcaaccaattcccttccattggcagcaatcttctgtcgtccaagatgacaacatg 13470482  T

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Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 14112881 - 14112982
Alignment:
Q  155 taccatgaaggtcgagcataagtacatggccagtgaggttgctgcaaccaattccataccataggcagcaatcttctgtcgtccaagatgacaacatgtt 254  Q
    ||||||||||||||||||||| |||||| | ||||| |||||||||||||||||| | |||| ||||||||||||||||| |||||||||||| ||||||    
T  14112881 taccatgaaggtcgagcataattacatgacaagtgacgttgctgcaaccaattcccttccattggcagcaatcttctgtcctccaagatgacagcatgtt 14112980  T
Q  255 gt 256  Q
    ||    
T  14112981 gt 14112982  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 14112783 - 14112855
Alignment:
Q  21 atttccaccgaggttcaaatgctttaactgctacaactccatcagtgacttgtggatgtcaccgctgatataa 93  Q
    |||||||| ||||||||||| |||||| |||| |||||| ||||||||||||||||| ||||| |||||||||    
T  14112783 atttccactgaggttcaaatactttaattgctgcaactctatcagtgacttgtggatatcaccactgatataa 14112855  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 13470689 - 13470617
Alignment:
Q  21 atttccaccgaggttcaaatgctttaactgctacaactccatcagtgacttgtggatgtcaccgctgatataa 93  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||| |||||||||||| ||||| || ||||||    
T  13470689 atttccaccaaggttcaaatactttaattgctgcaactccatcaatgacttgtggatatcaccactcatataa 13470617  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 14049169 - 14049248
Alignment:
Q  25 ccaccgaggttcaaatgctttaactgctacaactccatcagtgacttgtggatgtcaccgctgatataagatctatttcc 104  Q
    |||| ||||||||||| |||||  |||| ||||||||||| ||| |||||||| ||||| | ||||||| ||||||||||    
T  14049169 ccacggaggttcaaatactttagttgctgcaactccatcaatgagttgtggatatcaccacggatataaaatctatttcc 14049248  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 13943302 - 13943348
Alignment:
Q  45 taactgctacaactccatcagtgacttgtggatgtcaccgctgatat 91  Q
    |||||| | |||||||||||||||||||||||| |||||||||||||    
T  13943302 taactgttgcaactccatcagtgacttgtggatatcaccgctgatat 13943348  T

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