View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_59 (Length: 267)
Name: NF16240_high_59
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 39217344 - 39217548
Alignment:
| Q |
9 |
gagatgaaagtaagagttatctacatctatacacaaatattttagtaacattgatatacaaaatagacagattaaataccttacaannnnnnnaatatat |
108 |
Q |
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| T |
39217344 |
gagatgaaagtaagagttatctacatctatacacaaatattttagtaacattgatatacaaaatagacagattaaataccttacaatttttttaatatat |
39217443 |
T |
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| Q |
109 |
atgaaaattaccgacaaaacaaacttataaaaaaggacggaggtagtagatagtacatggtacatattattgatatggagctaagtaaatagatacatct |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
39217444 |
atgaaaattaccaacaaaacaaacttataaaaaaggacggaggtagtagacagtacatggtacatattactgatatggagctaaataaatagatacatct |
39217543 |
T |
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| Q |
209 |
tccct |
213 |
Q |
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||||| |
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| T |
39217544 |
tccct |
39217548 |
T |
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