View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_63 (Length: 249)
Name: NF16240_high_63
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27991828 - 27992071
Alignment:
| Q |
1 |
tgattgaaccctaacattaaaacataatcaaat-gattcatttcactccaaaatccaaatcaaaccaaaaacagtttcattgcgatccatctccaatctc |
99 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27991828 |
tgattgaaccctaacattaaaacttaatcaaattgattcatttcactccaaaatccaaatcaaaccaaaaacagtttcattgcgatccatctccaatctc |
27991927 |
T |
|
| Q |
100 |
tgcagcagctccgttgcgacccatctccgatctccacaacagcttcgtcacctcaccatcttctttgcgcagttttgaaggtagccatttcacggaatct |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27991928 |
tgcagcagctccgttgctacccatctccgatctccacaacagctccgtcacctcaccatcttctttgcgcagtttcgaaggtagccatttcacggaatct |
27992027 |
T |
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| Q |
200 |
aatttggagtcccttgacttacggcattgggtcctcatattctt |
243 |
Q |
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||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
27992028 |
aatttggagtcccttgagtgacgacattgggtcctcatattctt |
27992071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 28001734 - 28001878
Alignment:
| Q |
95 |
atctctgcagcagctccgttgcgacccatctccgatctccacaacagcttcgtcacctcaccatcttct---ttgcgcag-ttttgaaggtagccatttc |
190 |
Q |
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|||||||||||||||| | |||||||||||||||||| |||| |||| ||||||||||||| | ||| |||| ||| ||||||||||||||||||| |
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| T |
28001734 |
atctctgcagcagctctctcgcgacccatctccgatcttcacagcagccccgtcacctcaccaccatctccgttgcacagcttttgaaggtagccatttc |
28001833 |
T |
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| Q |
191 |
acggaatctaatttggagtcccttgacttacggcattgggtcctc |
235 |
Q |
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| T |
28001834 |
acgaaatctaatttggagtcccttggcttaagacattgggtcctc |
28001878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24004152 - 24004222
Alignment:
| Q |
1 |
tgattgaaccctaacattaaaacataatcaaat-gattcatttcactccaaaatccaaatcaaaccaaaaa |
70 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
24004152 |
tgattgaaccctaacattaaaacttaatcaaataaattcatttcactccaaaatctaaatcaaacaaaaaa |
24004222 |
T |
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