View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_67 (Length: 245)
Name: NF16240_high_67
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 5030414 - 5030622
Alignment:
| Q |
18 |
taagtttgtcagagtagattatcaattaataaaaattatttgtttacataaactcatttttcataagctaaaa-aactagccatccaaacgggctttatg |
116 |
Q |
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| T |
5030414 |
taagtttgtcagagtagattatcatttaataaaaattatttgtttacataaactcatttttcataagctaaaaaaactagccatccaaacgggctttatg |
5030513 |
T |
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| Q |
117 |
tcaaatttacctttttctctttaaacctgagccgttgccaaaagaatccgaaagaataatatatacattagtaaagccagtgattgaacactcacctcag |
216 |
Q |
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| T |
5030514 |
tctattttacctttttctctttaaacctgagccgttgccaaaagaatccgaaagaataatata-acattagtaaagccagtgattgttcactcacctcag |
5030612 |
T |
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| Q |
217 |
ttacggtact |
226 |
Q |
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| T |
5030613 |
ttacggtact |
5030622 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 7982980 - 7983048
Alignment:
| Q |
95 |
agccatccaaac-gggctttatgtcaaatttacctttttctctttaaacctgagccgttgccaaaagaat |
163 |
Q |
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|||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7982980 |
agccatccaaacagggctttatgtcta-tttacctttttctctttaaacctcagccgttgtgaaaagaat |
7983048 |
T |
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