View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_68 (Length: 238)
Name: NF16240_high_68
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_68 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 41003229 - 41003426
Alignment:
| Q |
23 |
agcttaactttatctagggtttctctcaaaaagtgaatcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacattttct |
122 |
Q |
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| T |
41003229 |
agcttaactttatctagggtttctctcaaaaagtgaatcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacattttct |
41003328 |
T |
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| Q |
123 |
gctatatatcaatataaaatttgcaatatatattaagaaagcttaaataaatactttgagggtaagtatatactatgtgaatgaatatcacttaaatt |
220 |
Q |
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| T |
41003329 |
gctatatatcaatataaaatttgcaatatatattaagaaagcttaaataaatactttgagggtaagtatatactatgtgaatgaatatcacttaaatt |
41003426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 20855563 - 20855689
Alignment:
| Q |
23 |
agcttaactttatctagggtttctctcaaaaagtgaatcattgatttggcatgtatggcctgcatgtatgt----ttagcttgaatttttaagcaacatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20855563 |
agcttaactttatctagggtttctctcaaaaagtgaatcattgatttggcatgtatggcctgcatgtatgtttaattagcttgaatttttaagcaacatt |
20855662 |
T |
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| Q |
119 |
ttctgctatatatcaatataaaatttg |
145 |
Q |
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| T |
20855663 |
ttctgctatatatcaatataaaatttg |
20855689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 20855686 - 20855729
Alignment:
| Q |
177 |
tttgagggtaagtatatactatgtgaatgaatatcacttaaatt |
220 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
20855686 |
tttgagggtatgtatatactatgtaaatgaatatcacttaaatt |
20855729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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