View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_7 (Length: 595)
Name: NF16240_high_7
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 29740299 - 29739724
Alignment:
| Q |
19 |
aatgtgcatactaaatgcatgattggaaatcaacacaaaaaaccattcctagagagtacttcttggagaactactcaatgtatgtgaaataataaagaag |
118 |
Q |
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| T |
29740299 |
aatgtgcatactaaatgcatgattggaaatcaacacaaaaaaccattcctagagagtacttcttggagaactactcaatgtatgtgaaataataaagaag |
29740200 |
T |
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| Q |
119 |
tggagagtttagcttagttgggaagttgcaagaaaatataagaaaaatagatttgaaaaaacattcgattaatataaggggtggggttgaaaaaacattt |
218 |
Q |
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| T |
29740199 |
tggagagtttagcttagttgggaagttgcaagaaaatataagaaaaatagatttgaaaaaacattcgattagtataaggggtggggttgaaaaaacattt |
29740100 |
T |
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| Q |
219 |
tttgacgggccatctcatcaactcgctaaggggtggggtgaaaatttgaactcgaccacctatgttggtccaccccacttcgccttgtttttcacgagtt |
318 |
Q |
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| T |
29740099 |
tttgacgggccatctcatcaactcgctaaggggtggggtgaaaatttgaactcgaccatctatgttggtccaccccacttcgccttgtttttcacgagtt |
29740000 |
T |
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| Q |
319 |
aatagtgaggtgggcctaaacagggaggaccgaatcacattgtcatccctaagtatggatatcgtagnnnnnnnnnccatgagtaaagtaagggcgctgt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
29739999 |
aatagtgaggtgggcctaaacagggaggaccgaatcacattgtcatccctaagtatggatatcgtagaaaaaaaaaccatgagtagagtaagggcgctgt |
29739900 |
T |
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| Q |
419 |
tttaacaagctgtcatgttcaaagttgtgagattcaagatgctctcttgactttcatgattaatcatcgtacattatatttttctctgatgactcttcat |
518 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
29739899 |
tttaacaagctgtcatgtccaaagttgtgagattcaagatgctctcttgactttcatgattaatcatcgcacattatattattctctgatgactcttcat |
29739800 |
T |
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| Q |
519 |
tctagtatgagttgaagatgaatgcttctactagatcacatctagtgattcatcttttgtgagtgatttcttgatg |
594 |
Q |
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| T |
29739799 |
tctagtatgagctgaagatgaatgcttctactagatcacatctagtgattcatcttttgtgagtgatttcttgatg |
29739724 |
T |
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