View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_73 (Length: 234)
Name: NF16240_high_73
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_73 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 36138613 - 36138815
Alignment:
| Q |
17 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
116 |
Q |
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| T |
36138613 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
36138712 |
T |
|
| Q |
117 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36138713 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaat |
36138812 |
T |
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| Q |
217 |
ggt |
219 |
Q |
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||| |
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| T |
36138813 |
ggt |
36138815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 30819255 - 30819450
Alignment:
| Q |
17 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||| || | |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
30819255 |
caaaggctatatctttatttaacttaagttagtcaaatggattccccatttttaggtttcggagcttcagaagaaaatagagaatgctggaggtgaaaaa |
30819354 |
T |
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| Q |
117 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||| | |||||||||||| |
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| T |
30819355 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctgtatattg---agaactttcaattcaatctgataccttgtctatactaa |
30819450 |
T |
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