View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_85 (Length: 215)
Name: NF16240_high_85
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 26545183 - 26544981
Alignment:
| Q |
1 |
cctagttagtagtacaacattcaactcactcttagatcacatttcacactcaaattctcagcattcagttaccatttccaataatctaaatctcactctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26545183 |
cctagttagtagtacaacattcaactcactcttagatcacatttcacactcaaattctcagcattcagtta------ccaataatctaaatctcactctg |
26545090 |
T |
|
| Q |
101 |
atcaagttagcacatttttc--nnnnnnnnnnnnnnnacatttagttcatacttcatactctaatttggtcaggttatatttattgttgtttaattaatt |
198 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26545089 |
atcaagttagcacatttttcatatatatatatatataacatttagttcatacttcatactctaatttggtcaggttatatttattgctgtttaattaatt |
26544990 |
T |
|
| Q |
199 |
attttcttc |
207 |
Q |
| |
|
||||||||| |
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|
| T |
26544989 |
attttcttc |
26544981 |
T |
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