View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_high_87 (Length: 206)
Name: NF16240_high_87
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_high_87 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 5118214 - 5118027
Alignment:
| Q |
1 |
agttcaatagatgtagccgtttcattttctcaactcatttgtcatctagctgttttttaggagtgcgtaaaatatgaagttgtcaactaagacattgtat |
100 |
Q |
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| T |
5118214 |
agttcaatagatgtagccgtttcattttctcaactcatttgtcatctagctgttttttaggagtgcgtaaaatatgaagttgtcaactaagacattgtat |
5118115 |
T |
|
| Q |
101 |
gttcacaacaagtgaaccggatcaaagtcaatccaatgagtacaaattcaacttctacaaaaaattgagtgttccaatatcatgtgag |
188 |
Q |
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| T |
5118114 |
gttcacaacaagtgaaccgaatcaaagtcaatccaatgggtacaaattcaacttctacaaaaaattgagtgttccaatatcatgtgag |
5118027 |
T |
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