View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_low_1 (Length: 941)

Name: NF16240_low_1
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_low_1
NF16240_low_1
[»] chr4 (11 HSPs)
chr4 (11-923)||(15525005-15525923)
chr4 (633-745)||(490067-490179)
chr4 (265-391)||(15564845-15564971)
chr4 (265-391)||(15577492-15577618)
chr4 (72-226)||(15544628-15544778)
chr4 (745-797)||(18154651-18154703)
chr4 (745-797)||(20070900-20070952)
chr4 (514-589)||(15545331-15545406)
chr4 (589-633)||(18179665-18179709)
chr4 (287-330)||(15545140-15545183)
chr4 (802-857)||(36662869-36662924)
[»] chr3 (1 HSPs)
chr3 (633-745)||(13223996-13224108)
[»] chr5 (1 HSPs)
chr5 (633-744)||(20737626-20737737)
[»] chr8 (2 HSPs)
chr8 (633-745)||(15002598-15002710)
chr8 (658-741)||(11649158-11649241)
[»] scaffold0002 (1 HSPs)
scaffold0002 (632-745)||(187429-187542)
[»] scaffold0432 (1 HSPs)
scaffold0432 (745-797)||(819-871)
[»] scaffold0477 (1 HSPs)
scaffold0477 (589-633)||(8662-8706)
[»] chr6 (2 HSPs)
chr6 (589-633)||(4639410-4639454)
chr6 (678-744)||(26857496-26857562)
[»] chr1 (1 HSPs)
chr1 (589-633)||(31265960-31266004)
[»] chr7 (1 HSPs)
chr7 (633-676)||(41791683-41791726)
[»] scaffold0197 (1 HSPs)
scaffold0197 (748-792)||(4988-5032)


Alignment Details
Target: chr4 (Bit Score: 812; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 11 - 923
Target Start/End: Original strand, 15525005 - 15525923
Alignment:
11 catcatcacatccctcgtaagaggtatatcctccgattctagatcaagtacctgctgtagtgcttgacttaggtgttgtatccgcagattcaaatcaaca 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15525005 catcatcacatccctcgtaagaggtatatcctccgtttctagatcaagtacctgctgtagtgcttgacttaggtgttgtatccgcagattcaaatcaaca 15525104  T
111 ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattgtacttaaagcattgaatctagaataggataaacatacaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
15525105 ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaacagtttaaccattgtacttaaagcattgaatctaaaataggataaacatacaa 15525204  T
211 tggaacattcat------aactgatatctggcacacaataatgaaacaaattagtaatgcgaggatacctccctagaagaaggctgaaggaattgaggaa 304  Q
    ||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
15525205 tggaacattcataatcataactgatatctggcacacaataatgaaacaaattattaatgcgaggatacctcccaagaagaaggctgaaggaattgaggaa 15525304  T
305 aaagcgaagatgacaacggaggtagatggccgaaggaatcatcgagccttgtggcacagaacagaaataaatattcataattagtatcacagttgaaaaa 404  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
15525305 aaagcgaagatgacaacagaggtagacagccgaaggaatcatcgagcctagtggcacagaacagaaataaatattcataattagtatcacagttgaaaaa 15525404  T
405 ctcatcaaaacttgacaggatcttatccaagcaataacataaacttcaaatcaactccaattcctaattttgcaactaaaagagcgcaatttttaatatc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
15525405 ctcatcaaaacttgacaggatcttatccaagcaataacataaacttcaaatcaactcaaattcctaattttgcaactaaaagagcgcaatttttaatatc 15525504  T
505 tgaactttgaagttctgtccatcttctgttgaattgacagaaaacaaaacccaaaatctttatataaaaacactaaactcaaatggtcgtcattcggttc 604  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
15525505 tgaactctgaagttctgtccattttctgttgaattgacagaaaacaaaacccaaaatcttaatataaaaactctaaactcaaacggtcgtcattcggttc 15525604  T
605 aaagaatctccgttccagaaccgtacgtgcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcgg 704  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15525605 aaagaatctccattccagaaccgtacgtgcttcatgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcgg 15525704  T
705 ggtcacgattctttgtcccgtccattgtagcacgtgtgtcgggcgaactgctagttatcggatacgggatatccatcctagtcactatggacgtttagct 804  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15525705 ggtcgcgatcctttgtcccgtccattgtagcacgtgtgtcgggcgaactgctagttatcggatacgggatatccatcctagtcactatggacgtttagct 15525804  T
805 gaattgttgagaagtcataaacagaaccgcaaaaataaacgaccagaaaatctaaagcaacgaattaaaagctcatatgcacttgaactagaagagctta 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
15525805 gaattgttgagaagtcataaacagaaccgcaaaaataaacgaccagaaaatctaaagcaacgaattaaaagctcatatgaacttgaactagaagagctaa 15525904  T
905 ttcaaactggtcctattat 923  Q
    |||||||||||||||||||    
15525905 ttcaaactggtcctattat 15525923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 633 - 745
Target Start/End: Complemental strand, 490179 - 490067
Alignment:
633 gcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgt 732  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
490179 gcttcatgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcgcgatcctttgtcccgtccattgt 490080  T
733 agcacgtgtgtcg 745  Q
    |||||||||||||    
490079 agcacgtgtgtcg 490067  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 15564845 - 15564971
Alignment:
265 gaggatacctccctagaagaaggctgaaggaattgaggaaaaagcgaagatgacaacggaggtagatggccgaaggaatcatcgagccttgtggcacaga 364  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||| || ||||||||| || | |||||||| |  | ||| | |||||| |    
15564845 gaggataccttctgagaagaaggctgaaggaattgaggaaaaagcgaagatgataatggaggtagacggtccaaggaatcgtgaaacctagaggcacaaa 15564944  T
365 acagaaataaatattcataattagtat 391  Q
    ||| ||||| |||||||||||||||||    
15564945 acataaatacatattcataattagtat 15564971  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 15577492 - 15577618
Alignment:
265 gaggatacctccctagaagaaggctgaaggaattgaggaaaaagcgaagatgacaacggaggtagatggccgaaggaatcatcgagccttgtggcacaga 364  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||| || ||||||||| || | |||||||| |  | ||| | |||||| |    
15577492 gaggataccttctgagaagaaggctgaaggaattgaggaaaaagcgaagatgataatggaggtagacggtccaaggaatcgtgaaacctagaggcacaaa 15577591  T
365 acagaaataaatattcataattagtat 391  Q
    ||| ||||| |||||||||||||||||    
15577592 acataaatacatattcataattagtat 15577618  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 15544628 - 15544778
Alignment:
72 gcttgacttaggtgttgtatccgcagattcaaatcaacaataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattg 171  Q
    |||||||||||| || || ||||| |  |||||||| |||||||||||||| ||||||||||||| |||||||||||||| | ||| | |||||| |||     
15544628 gcttgacttaggcgtcgtgtccgctggctcaaatcatcaataacatgctgcaagatgcaacaagcttttgttcaattatttatgaacaatttaactatt- 15544726  T
172 tacttaaagcattgaatctagaataggataaacatacaatggaacattcataact 226  Q
        |||||||||||| ||| ||||| ||||||||| ||||||||||||| ||||    
15544727 ---ataaagcattgaaactataatagcataaacataaaatggaacattcaaaact 15544778  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 745 - 797
Target Start/End: Complemental strand, 18154703 - 18154651
Alignment:
745 gggcgaactgctagttatcggatacgggatatccatcctagtcactatggacg 797  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
18154703 gggcgaactgctagttttcggatacgggatatccatcctagtcactatggacg 18154651  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 745 - 797
Target Start/End: Original strand, 20070900 - 20070952
Alignment:
745 gggcgaactgctagttatcggatacgggatatccatcctagtcactatggacg 797  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
20070900 gggcgaactgctagttttcggatacgggatatccatcctagtcactatggacg 20070952  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 514 - 589
Target Start/End: Original strand, 15545331 - 15545406
Alignment:
514 aagttctgtccatcttctgttgaattgacagaaaacaaaacccaaaatctttatataaaaacactaaactcaaatg 589  Q
    ||||| ||||||| |||| |||||||||||||||||| ||||| |||| || |||||||||| |||||||||||||    
15545331 aagttatgtccattttctattgaattgacagaaaacagaaccccaaattttaatataaaaactctaaactcaaatg 15545406  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 589 - 633
Target Start/End: Original strand, 18179665 - 18179709
Alignment:
589 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 633  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
18179665 ggtcgtcattcggttcaaagaatatccgttccagaaccgtacgtg 18179709  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 15545140 - 15545183
Alignment:
287 gctgaaggaattgaggaaaaagcgaagatgacaacggaggtaga 330  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
15545140 gctgaaggaattggggaaaaagcgaagatggcaacggaggtaga 15545183  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 857
Target Start/End: Original strand, 36662869 - 36662924
Alignment:
802 gctgaattgttgagaagtcataaacagaaccgcaaaaataaacgaccagaaaatct 857  Q
    |||||| |||| |||||||| |||||||||| ||||||| || |||||||||||||    
36662869 gctgaactgttcagaagtcaaaaacagaaccccaaaaatgaaagaccagaaaatct 36662924  T

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Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 633 - 745
Target Start/End: Original strand, 13223996 - 13224108
Alignment:
633 gcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgt 732  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
13223996 gcttcatgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcgcgatcctttgtcccgtccattgt 13224095  T
733 agcacgtgtgtcg 745  Q
    |||||||||||||    
13224096 agcacgtgtgtcg 13224108  T

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Target: chr5 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 633 - 744
Target Start/End: Complemental strand, 20737737 - 20737626
Alignment:
633 gcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgt 732  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
20737737 gcttcatgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcgcgatcctttgtcccgtccattgt 20737638  T
733 agcacgtgtgtc 744  Q
    ||||||||||||    
20737637 agcacgtgtgtc 20737626  T

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Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 633 - 745
Target Start/End: Original strand, 15002598 - 15002710
Alignment:
633 gcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgt 732  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||    
15002598 gcttcatgtaggtgagttgcagcctacattccgaactgaggacgggtttttgaagttagctcaccctcgcgagatcacgatcctttgtcacgtccattgt 15002697  T
733 agcacgtgtgtcg 745  Q
    || ||||||||||    
15002698 agaacgtgtgtcg 15002710  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 741
Target Start/End: Complemental strand, 11649241 - 11649158
Alignment:
658 acaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgtagcacgtgt 741  Q
    ||||||| |||| | |||| |||||||||||| |||||||||| | |||||| ||| || |||| || ||||||||||| ||||    
11649241 acaatcctaactaacgacgagtttttgaagttggctcaccctcacagggtcatgatcctctgtctcgaccattgtagcatgtgt 11649158  T

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Target: scaffold0002 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 632 - 745
Target Start/End: Original strand, 187429 - 187542
Alignment:
632 tgcttcctgtaggcgagttgcagcctacaatccgaactgaggacgggtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattg 731  Q
    |||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || |||  |||||||||| ||||||    
187429 tgcttcatgcaggcgagttgcagcctgcaatccgaactgaggacgggtttttggagttagctcaccctcgcgagatcgcgaccctttgtcccgcccattg 187528  T
732 tagcacgtgtgtcg 745  Q
    ||||||||||||||    
187529 tagcacgtgtgtcg 187542  T

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Target: scaffold0432 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 745 - 797
Target Start/End: Complemental strand, 871 - 819
Alignment:
745 gggcgaactgctagttatcggatacgggatatccatcctagtcactatggacg 797  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
871 gggcgaactgctagttttcggatacgggatatccatcctagtcactatggacg 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 589 - 633
Target Start/End: Original strand, 8662 - 8706
Alignment:
589 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
8662 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 8706  T

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Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 589 - 633
Target Start/End: Complemental strand, 4639454 - 4639410
Alignment:
589 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
4639454 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 4639410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 678 - 744
Target Start/End: Complemental strand, 26857562 - 26857496
Alignment:
678 gtttttgaagttagctcaccctcgcggggtcacgattctttgtcccgtccattgtagcacgtgtgtc 744  Q
    ||||||||||| ||||||||| || ||| ||  ||| |||||||||| |||||||||||||||||||    
26857562 gtttttgaagtcagctcacccacgtgggatcgtgatcctttgtcccgaccattgtagcacgtgtgtc 26857496  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 589 - 633
Target Start/End: Original strand, 31265960 - 31266004
Alignment:
589 ggtcgtcattcggttcaaagaatctccgttccagaaccgtacgtg 633  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
31265960 ggtcgtcattcggttcaaagaatatccgttccagaaccgtacgtg 31266004  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 41791726 - 41791683
Alignment:
633 gcttcctgtaggcgagttgcagcctacaatccgaactgaggacg 676  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
41791726 gcttcatgtaggcgagttgcagcctacaatccgaactgaggacg 41791683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 792
Target Start/End: Original strand, 4988 - 5032
Alignment:
748 cgaactgctagttatcggatacgggatatccatcctagtcactat 792  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||    
4988 cgaactgctagttttcggatgcaggatatccatcctagtcactat 5032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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