View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_13 (Length: 515)
Name: NF16240_low_13
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 43708147 - 43708632
Alignment:
| Q |
19 |
tggttgacttaagagtaatatgccatcagttacgttgttaaatatttcccatccgtaacatgttaaccnnnnnnn--ttgtttgcacaaatagcaaaccg |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43708147 |
tggttaacttaagagtaatatgccatcagttaagttgttaaatatttcccatccgtaacatgttaaccaaaaaaaaattgtttgcacaaatagcaaaccg |
43708246 |
T |
|
| Q |
117 |
aaatgaggtttcttaaaggtggctaatgttgagtcgcaataggatcctaaaatattggaggatcactgcattgggttaagagctatcacacaatttaaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43708247 |
aaatgaggtttcttaaaggtggctaatgttgagtcgcaataggattctaaaatattggaggatcactgcatttggttaagagctatcacacaatttaaaa |
43708346 |
T |
|
| Q |
217 |
tgtagtagaaatgaataaatgcactaaatggcaatgcattattcccaatgatcattttcctcggttttcctcagccttaaaatattttcctgtcgcgata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43708347 |
tgtagtagaaatgaataaatgcactaaatggcaatgcattattcccaatgatcattttcctcggttttcctcagccttaaaatattttcctgtcgcgata |
43708446 |
T |
|
| Q |
317 |
ttgccatgtgatgtgtaccctaagaagatggagattgattgcttgattatgcaagtgcttctccattagtactttacttcttgcaaagttttgagtcaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43708447 |
ttgccatgtgatgtgtaccctaagaagatggagattgattgcttgattatgcaagtgcttctccattagtactttacttcttgcaaag-tttgagtcaat |
43708545 |
T |
|
| Q |
417 |
aataacggtaatgataagtatagcgagaaaaaatttcacgagtgatttggcatatttatgtcccttagatttcaatttcttttcact |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43708546 |
aataacggtaatgataagtatagcgagaaaaaatttcacgagtgatttggcatattaatgtcccttagatttcaatttcttttcact |
43708632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 28252290 - 28252327
Alignment:
| Q |
451 |
ttcacgagtgatttggcatatttatgtcccttagattt |
488 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
28252290 |
ttcacgactgatttggcatatttatgttccttagattt |
28252327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 34347303 - 34347341
Alignment:
| Q |
451 |
ttcacgagtgatttggcatatttatgtcccttagatttc |
489 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
34347303 |
ttcacgaatgatttggcatatttatgtcccttatatttc |
34347341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University