View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_14 (Length: 510)
Name: NF16240_low_14
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 2896388 - 2895879
Alignment:
| Q |
1 |
tcgcttgaagtgatctgaataagttcttcttttgttgaggcttaggaggtctatgatgcagttcattcaacacaaaacacttgagcaacttttgataact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2896388 |
tcgcttgaagtgatctgaataagttcttcttttgttgaggcttaggaggtctatgatgcagttcattcaacacaaaacacttgagcaacttttgataact |
2896289 |
T |
|
| Q |
101 |
aaccctcactttaaccggatacgatggaggacaatgctccttgtaccattctgacacaagaggaatgtcttctgcacgcctcattcggcccgatctcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2896288 |
aaccctcactttaaccggatacgatggaggacaatgctccttgtaccattctgacacaagaggaatgtcttctgcacgcctcattcggcccgatctcatg |
2896189 |
T |
|
| Q |
201 |
ttaaaaggacggggagcaaaaagcaatgacattccatcagtggtagtgtcagtataaagttccacatctttgagaaaaggttccacaccatcaggcaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2896188 |
ttaaaaggacggggagcaaaaagcaatgacattccatcagtggtagtgtcggtataaagctccacatctttgagaaaaggttccacaccatcaggcaaaa |
2896089 |
T |
|
| Q |
301 |
tccagtcatcatcatcctcagtgcagatttccatctcgcaccgctctttgttaccagcaccagctatcgggtgtatcaagggatcataataaaatgcagg |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2896088 |
tccagtcatcatcatcctcattgcagatttccatctcgcaccgctctttgttaccagcaccagctatcgggtgtatcaagggatcataataaaatgcagg |
2895989 |
T |
|
| Q |
401 |
taaatcaggatcatcagccttcacatacacaaccatgggagtatggtaaacaccaagccttactttcctcggcctatcgttataaagatacggaaaagca |
500 |
Q |
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| T |
2895988 |
taaatcaggatcatcagccttcacatacacaaccatgggagtatggtaaacaccaagccttactttcctcggcctatcgttataaagatgcggaaaagca |
2895889 |
T |
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| Q |
501 |
atcctgtact |
510 |
Q |
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||||| |||| |
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| T |
2895888 |
atcctatact |
2895879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 132 - 489
Target Start/End: Original strand, 44784485 - 44784842
Alignment:
| Q |
132 |
caatgctccttgtaccattctgacacaagaggaatgtcttctgcacgcctcattcggcccgatctcatgttaaaaggacggggagcaaaaagcaatgaca |
231 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || | |
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| T |
44784485 |
caatgctccttgtaccattccgacacaagaggaatgtcttctgcacgcctcatgcggccagatctcatgttaaaaggacgaggagcaaaaagcaaggaaa |
44784584 |
T |
|
| Q |
232 |
ttccatcagtggtagtgtcagtataaagttccacatctttgagaaaaggttccacaccatcaggcaaaatccagtcatcatca---tcctcagtgcagat |
328 |
Q |
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||||| ||| || ||||| |||||||||| |||||| |||||||| || |||||||| || | | ||||||||||||| |||||| |||| |
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| T |
44784585 |
ttccagcagctgtggtgtcggtataaagttgtgtatctttaagaaaaggctcaacaccatctggaaggacccagtcatcatcatcctcctcatcatagat |
44784684 |
T |
|
| Q |
329 |
ttccatctcgcaccgctctttgttaccagcaccagctatcgggtgtatcaagggatcataataaaatgcaggtaaatcaggatcatcagccttcacatac |
428 |
Q |
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|| | |||| | |||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||| ||| ||||| |||| || | ||| |
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| T |
44784685 |
tttcttctcccgccgctctttgtt---agcactggttattgggtgtatcaagggatcataataaaatgcaggtagatcgggatcttcagtttttatgtac |
44784781 |
T |
|
| Q |
429 |
acaaccatgggagtatggtaaacaccaagccttactttcctcggcctatcgttataaagat |
489 |
Q |
| |
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| ||||||||| |||||||||| || |||||||||||| | ||||| | ||||||||||| |
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| T |
44784782 |
ataaccatgggtgtatggtaaatacaaagccttactttacgaggcctgttgttataaagat |
44784842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 44784216 - 44784345
Alignment:
| Q |
3 |
gcttgaagtgatctgaataagttcttcttttgttgaggcttaggaggtctatgatgcagttcattcaacacaaaacacttgagcaacttttgataactaa |
102 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||| ||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
44784216 |
gcttgaagtgatctgaataagtgtttctttttttgagccttgggaggtctgtgatgcagctcattcaacacaaaacacttgagcaatttttgataactaa |
44784315 |
T |
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| Q |
103 |
ccctcactttaaccggatacgatggaggac |
132 |
Q |
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| T |
44784316 |
ctcggactttaactggatatgaaggaggac |
44784345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 26157257 - 26157128
Alignment:
| Q |
3 |
gcttgaagtgatctgaataagttcttcttttgttgaggcttaggaggtctatgatgcagttcattcaacacaaaacacttgagcaacttttgataactaa |
102 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| | |
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| T |
26157257 |
gcttcaagtgatctgaataagtgtttctttttttgagccttaggaggtctgtgatgcagctcattcaacacaaaacacttgagcaatttttgataactta |
26157158 |
T |
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| Q |
103 |
ccctcactttaaccggatacgatggaggac |
132 |
Q |
| |
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| | |||||||| ||||| |||||||||| |
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| T |
26157157 |
ctcggactttaactggatatgatggaggac |
26157128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 26170555 - 26170426
Alignment:
| Q |
3 |
gcttgaagtgatctgaataagttcttcttttgttgaggcttaggaggtctatgatgcagttcattcaacacaaaacacttgagcaacttttgataactaa |
102 |
Q |
| |
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|||| ||||||||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| | |
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| T |
26170555 |
gcttcaagtgatctgaataagtgtttctttttttgagccttaggaggtctgtgatgcagctcattcaacacaaaacacttgagcaatttttgataactta |
26170456 |
T |
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| Q |
103 |
ccctcactttaaccggatacgatggaggac |
132 |
Q |
| |
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| | |||||||| ||||| |||||||||| |
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| T |
26170455 |
ctcggactttaactggatatgatggaggac |
26170426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 26156983 - 26156920
Alignment:
| Q |
173 |
tgcacgcctcattcggcccgatctcatgttaaaaggacggggagcaaaaagcaatgacattcca |
236 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||| |||||||||||||| || |||||| |
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| T |
26156983 |
tgcacgcctcatgcggccaggtctcatgttaaaaggacgaggagcaaaaagcaaggaaattcca |
26156920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 26170281 - 26170218
Alignment:
| Q |
173 |
tgcacgcctcattcggcccgatctcatgttaaaaggacggggagcaaaaagcaatgacattcca |
236 |
Q |
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|||||||||||| ||||| | |||||||||||||||||| |||||||||||||| || |||||| |
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| T |
26170281 |
tgcacgcctcatgcggccaggtctcatgttaaaaggacgaggagcaaaaagcaaggaaattcca |
26170218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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