View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_17 (Length: 488)
Name: NF16240_low_17
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 2400866 - 2400602
Alignment:
| Q |
19 |
atagctaggaacaataattaaagcacttgcactttgaattagaacccattacactaatttagccaactagcttaattaaggatatgtctagtcgaagatc |
118 |
Q |
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| T |
2400866 |
atagctaggaacaataattaaagtacttgcactttgaa---gaacccattacactaatttagacaactagcttaattaaggatatgtctagtcgaaggtc |
2400770 |
T |
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| Q |
119 |
aaggcaacaatcaggtgggtctacacggatttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaa |
218 |
Q |
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| T |
2400769 |
aaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaacttgttcctgagattcgtaataggcgc |
2400670 |
T |
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| Q |
219 |
tctgacaaggtactatagctatttcaatcactctatagtatagatacacactattcataaggatgttaaagtt |
291 |
Q |
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| T |
2400669 |
tctgacaaggtactatagctatttcaatcactct-----atagatacacactattcataaggatgttaaagtt |
2400602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
147 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
230 |
Q |
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| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
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