View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_18 (Length: 485)
Name: NF16240_low_18
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 256 - 469
Target Start/End: Original strand, 12867255 - 12867472
Alignment:
| Q |
256 |
ggtgaattactcaatttcttaggaggaattagtggt------gatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttatt |
349 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
12867255 |
ggtgaattactcaatttcttagcaggaactagttgtagttgtgatgatcttaaggagcgaagccaagttttgtatgataaagtgaagaacaagtttcatt |
12867354 |
T |
|
| Q |
350 |
ctgataagaacttcttcgtgtgtgtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
449 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12867355 |
ctgataagaacttcttcgtgt--gtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
12867452 |
T |
|
| Q |
450 |
gaaataaaataaaatatttt |
469 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12867453 |
gaaataaaataaaatatttt |
12867472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 12867001 - 12867161
Alignment:
| Q |
1 |
catcacggcgaggtaaaaggccaaaatcttcatcaccagattctggagtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12867001 |
catcacggcgaggtaaaaggccaaaatcttcatcaccgtcttctggagtttctaagaagatgaaaaacaatccagaagaacaaaaagaatctaagcatga |
12867100 |
T |
|
| Q |
101 |
gaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatggttgg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12867101 |
gaagagaaaagtccaagcacatgcaagatttcataattttaaggatgtggacaatggttgg |
12867161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 15134284 - 15134395
Alignment:
| Q |
48 |
gtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatg |
147 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||| || | ||||| | || |||| ||||| ||||||||||||| |
|
|
| T |
15134284 |
gtttgtaagaagatgaaaatcaacccagaggaacaaaaagaatctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaggata |
15134383 |
T |
|
| Q |
148 |
tggacaatggtt |
159 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
15134384 |
tgaacaatggtt |
15134395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 15134613 - 15134662
Alignment:
| Q |
384 |
gacatacattaaaagagatcttatggtaacaaaatattttatttgatcac |
433 |
Q |
| |
|
|||| ||||| | ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
15134613 |
gacacacattgagagagatcttttggtaacaaactattttatttgatcac |
15134662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 279 - 437
Target Start/End: Original strand, 49743134 - 49743292
Alignment:
| Q |
279 |
aggaattagtggtgatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttattctgataagaacttcttcgtgtgtgtgatc |
378 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||| |||||||||| || ||||| ||||| || | |||||| | | |||||| ||||| ||||| |
|
|
| T |
49743134 |
aggaagtagttgtgatgatcttaaggagagaagcaaagttttgtacgacaaagtgaagaattttttccacgctgatatggatttcttcatgtgtatgatc |
49743233 |
T |
|
| Q |
379 |
caaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcactttt |
437 |
Q |
| |
|
|||| |||||||||||| | |||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
49743234 |
caaaagacatacattaagaaagatgtcttggtaacaaaacattttatttgatcactttt |
49743292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 49742916 - 49743020
Alignment:
| Q |
57 |
aagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatg |
156 |
Q |
| |
|
|||||||||| ||| || | |||||||||||| ||||||||||||||||||||||||||| ||| | ||| |||| ||| || |||||| |||||||| |
|
|
| T |
49742916 |
aagatgaaaatcaattcaaaagaacaaaaagaacctaagcatgagaagagaaaagtccaagaacaaggaaggtttcttaacttcaaggatacggacaatg |
49743015 |
T |
|
| Q |
157 |
gttgg |
161 |
Q |
| |
|
||||| |
|
|
| T |
49743016 |
gttgg |
49743020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University