View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_19 (Length: 477)
Name: NF16240_low_19
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_19 |
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| [»] scaffold0188 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 37341648 - 37341357
Alignment:
| Q |
19 |
gcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgctta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341648 |
gcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgctta |
37341549 |
T |
|
| Q |
119 |
acatgcttataaatttaaaacaatttgatttccttacttcatttgcaggctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341548 |
acatgcttataaatttaaaacaatttgatttccttacttcatttgcaagctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaa |
37341449 |
T |
|
| Q |
219 |
tgttgtttgaactgccatgttgcagttttgaaaacttggggcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
310 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341448 |
tgttgtttgaactgccatgttgcagttttgaagacttggggcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
37341357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 8922626 - 8922765
Alignment:
| Q |
27 |
ttggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgcttaacatgctt |
126 |
Q |
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|||||| ||||||||| | |||| | ||||||||||||||||| | |||||| |||| ||||||||| | |||||| |||||||||||||||||||||| |
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| T |
8922626 |
ttggttctttgttttatactttttccgttcaagaatatgattccatccatcaataaattaatatgaagcattgtttgacctttaattgcttaacatgctc |
8922725 |
T |
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| Q |
127 |
ataaatttaaaacaatttgatttccttacttcatttgcag |
166 |
Q |
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||||||||||| || ||||||| ||| | || |||||||| |
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| T |
8922726 |
ataaatttaaagcattttgattgcctcattttatttgcag |
8922765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 25890085 - 25889794
Alignment:
| Q |
19 |
gcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgctta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25890085 |
gcttcttattggttatttgttttacatttttccggttaaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgctta |
25889986 |
T |
|
| Q |
119 |
acatgcttataaatttaaaacaatttgatttccttacttcatttgcaggctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889985 |
acatgcttataaatttaaaacaatttgatttccttacttcatttgcaagctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaa |
25889886 |
T |
|
| Q |
219 |
tgttgtttgaactgccatgttgcagttttgaaaacttggggcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
310 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889885 |
tgttgtttgaactgccatgttgcagttttgaagacttggggcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
25889794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 38953402 - 38953347
Alignment:
| Q |
191 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttt |
246 |
Q |
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||||| ||| ||| ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
38953402 |
cttatgtgtaatatagtttaaattttaatgttgtctgaactgccatgttgcagttt |
38953347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 29539 - 29418
Alignment:
| Q |
191 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttgg-ggcctatatt-gaaaattcaaatgctttatct |
288 |
Q |
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||||| ||||||| |||||||||||||||||||| |||| ||||||||||| |||||||| |||||| |||||||||| |||| ||||||||| ||||| |
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| T |
29539 |
cttatgtgtgatatagtttgaattttaatgttgtgtgaaatgccatgttgctgttttgaagacttggaggcctatattagaaatttcaaatgc-atatct |
29441 |
T |
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| Q |
289 |
tgatgtttcgatttggaaccaag |
311 |
Q |
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|||||| |||||||||||||| |
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| T |
29440 |
gaatgttttgatttggaaccaag |
29418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 29403 - 29334
Alignment:
| Q |
340 |
ctctacttgagtatatgttaactcctttgcaatagttacgtatcaacctgtcattttaaatagttcctctg |
410 |
Q |
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||||||||||||||| ||||||||||||| |||||||| ||| || ||| ||||||||| ||| ||||||| |
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| T |
29403 |
ctctacttgagtataagttaactcctttggaatagttatgta-cagcctatcattttaattaggtcctctg |
29334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 29156330 - 29156451
Alignment:
| Q |
191 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttgg-ggcctatatt-gaaaattcaaatgctttatct |
288 |
Q |
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||||| ||||||| |||||||||||||||||||| |||| ||||||||||| |||||||| |||||| |||||||||| |||| ||||||||| ||||| |
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| T |
29156330 |
cttatgtgtgatatagtttgaattttaatgttgtgtgaaatgccatgttgctgttttgaagacttggaggcctatattagaaatttcaaatgc-atatct |
29156428 |
T |
|
| Q |
289 |
tgatgtttcgatttggaaccaag |
311 |
Q |
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|||||| |||||||||||||| |
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| T |
29156429 |
gaatgttttgatttggaaccaag |
29156451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 29156074 - 29156163
Alignment:
| Q |
30 |
gttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgcttaac |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| || |||||| |||| |||| |||| |
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| T |
29156074 |
gttatttgttttacatttttctggttcaagaatatgattcaattcaccactaaactaatatgaatcatt-ttttacatttatttgcataac |
29156163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 29156466 - 29156535
Alignment:
| Q |
340 |
ctctacttgagtatatgttaactcctttgcaatagttacgtatcaacctgtcattttaaatagttcctctg |
410 |
Q |
| |
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||||||||||||||| |||| |||||||| |||||||| ||| || ||| ||||||||| ||| ||||||| |
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| T |
29156466 |
ctctacttgagtataagttagctcctttggaatagttatgta-cagcctatcattttaattaggtcctctg |
29156535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 22966521 - 22966576
Alignment:
| Q |
191 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttt |
246 |
Q |
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||||| ||| ||| ||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
22966521 |
cttatgtgtaatatagtttaaattttaatgttgtctgaactgccatgttgcagttt |
22966576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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