View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_2 (Length: 755)
Name: NF16240_low_2
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Complemental strand, 15161381 - 15160657
Alignment:
| Q |
18 |
ctctgctaacaatagttctatctatttgattcagaaactataggttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttgctttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15161381 |
ctctgctaacaatagttctatctatttgattcagaaactataggttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttggtttt |
15161282 |
T |
|
| Q |
118 |
tatagattttgttaactagtagtttgttactaatatgatatgttgactaggtgcagtttcaccgcatacatactggcgctgggaagattgttcctgaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15161281 |
tatagattttgttaactagtagtttgttactaatatgatatgttgactaggtgcagtttcaccgcatacatactggtgctgggaagattgttcctgaagt |
15161182 |
T |
|
| Q |
218 |
ataggaggatggaattgtatggtcttattcttatatacaacaaaatatttgcaatttactttttgacaatgtagtttgttcagaggcataaacaaggtgc |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15161181 |
ctaggaggatggaattgtatggtcttattc-tatatacaac-aaatatttgcaatttactttttgacaatgtagtttgttcagaggcataaacatggtgc |
15161084 |
T |
|
| Q |
318 |
ttccaataagttgtttaatgtcaagcttattttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatag |
417 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15161083 |
ttcccataagttgtttaatgtcaagcttattttgtattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatag |
15160984 |
T |
|
| Q |
418 |
ggaaaccgattaaggcatcagatgtgcgtgagtctctccctataaat-catttcaatgtgtttagtgatcttaatgtttaatgatcttaatgtcatgatt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160983 |
ggaaaccgattaaggcatcagatgtgcgtgagtctctccctagaaatccgtttcaatgtgtttagtgatcttaatgtttaatgatcttaatgtcatgatt |
15160884 |
T |
|
| Q |
517 |
attatgagttactttcatcatactatatgagtatagtatgatcagtatgtaagatttgattgctaattctcactttcaattcatgtaggcaaaaactaac |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15160883 |
attatgagttactttcatcatactatatgagtatagtatgatcagtatgcaagatttgattgctaattctcattttcaattcatgtaggcaaaaactaac |
15160784 |
T |
|
| Q |
617 |
agccctgaatctgaggagatatgtattattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatcctgttttcaaatgc |
716 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15160783 |
agccctgaatctgaggatatatgtattattcgcttactggtgtatca-cttggagtcaaatctacctctgatgattttttcatatcctgttttcaaatgc |
15160685 |
T |
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| Q |
717 |
atgggcatgcaaagtagccttcctctgt |
744 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
15160684 |
atgggcatgcaaagtagccttcctctgt |
15160657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 739
Target Start/End: Original strand, 15315606 - 15315741
Alignment:
| Q |
603 |
aggcaaaaactaacagccctgaatctgaggagatatgtattattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatc |
702 |
Q |
| |
|
|||| |||| ||| ||||||||| || |||| | ||||||| ||||| | ||| | |||||||| || ||||| ||||||||| |||||||||||||||| |
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| T |
15315606 |
aggcgaaaaataatagccctgaagctcaggataaatgtattgttcgcctgttgctatatcatttcggtgtcaa-tctacctgttatgattttttcatatc |
15315704 |
T |
|
| Q |
703 |
ctgttttcaaatgcatgggcatgcaaagtagccttcc |
739 |
Q |
| |
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| || |||| || |||||| ||||| ||||| ||||| |
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| T |
15315705 |
ccgtcttcagatacatgggaatgcagagtagtcttcc |
15315741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 542 - 743
Target Start/End: Complemental strand, 26465505 - 26465310
Alignment:
| Q |
542 |
tatgagtatagtatgatcagtatgtaagatttgattgctaattctcactttcaattcatgtaggcaaaaactaacagccctgaatctgaggagatatgta |
641 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
26465505 |
tatgagtatagtatgatcaatatgtaagattagattgctaattctcactttca-----tgtaggcaaaaactaacagccgtgaatctgaggagagatgta |
26465411 |
T |
|
| Q |
642 |
ttattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatcctgttttcaaatgcatgggcatgcaaagtagccttcctc |
741 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26465410 |
ttattcgcttattggtgtatcattttggagtc-aatctacctgtgatgattttttcatatcctgttttcaaatacatgggcatgcaaagtagccttcctc |
26465312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 531 - 743
Target Start/End: Complemental strand, 14369937 - 14369731
Alignment:
| Q |
531 |
tcatcatactatatgagtatagtatgatcagtatgtaagatttgattgctaattctcactttcaattcatgtaggcaaaaactaacagccctgaatctga |
630 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||| | |
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| T |
14369937 |
tcattatactatatgagtatagtatgatcattatgtaagattttattgctaattctcactttca-----tgtagacaaaaattaacagccctgaatctaa |
14369843 |
T |
|
| Q |
631 |
ggagatatgtattattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatcctgttttcaaatgcatgggcatgcaaag |
730 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
14369842 |
ggagagatgtattattcgcttattggtgttacattttggagtcaa-tctacctgcgatgattttttcatatcctgttttcaaatacatgggcatgcatag |
14369744 |
T |
|
| Q |
731 |
tagccttcctctg |
743 |
Q |
| |
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||||||||||||| |
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| T |
14369743 |
tagccttcctctg |
14369731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 40250209 - 40250097
Alignment:
| Q |
169 |
tgcagtttcaccgcatacatactggcgctgggaagattgttcctgaagtataggaggatggaattgtatggtcttattcttatatacaacaaaatatttg |
268 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||| | || |||||||| |||||| |||||||||||||| || | ||||||||| |
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| T |
40250209 |
tgcagtttcacc--atacacactggtgctgggaagattgttcctgaagtcttgggggatggaaatgtatgttcttattcttatatgcagc-aaatatttg |
40250113 |
T |
|
| Q |
269 |
caatttactttttgac |
284 |
Q |
| |
|
|||||||||||||||| |
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| T |
40250112 |
caatttactttttgac |
40250097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 40249985 - 40249924
Alignment:
| Q |
364 |
ttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagggaaaccg |
425 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
40249985 |
ttctttagcttgattgatgataatactaattgatttaggtcagagttgatatgggggaaccg |
40249924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 32266289 - 32266233
Alignment:
| Q |
347 |
ttttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggt |
403 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
32266289 |
ttttgtattgtttctggttctttagcttgattgatgataatataaattaattaaggt |
32266233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 572
Target Start/End: Original strand, 24846712 - 24846753
Alignment:
| Q |
531 |
tcatcatactatatgagtatagtatgatcagtatgtaagatt |
572 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24846712 |
tcatcaaactatatgagtatagtatgatcagtatgtaagatt |
24846753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 37727704 - 37727630
Alignment:
| Q |
22 |
gctaacaatagttctatctatttgattca---gaaactataggttctcctttttgtattgatgtggaattcaagt |
93 |
Q |
| |
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||||||||||||| ||| |||| |||||| |||||||| || | ||||||||||||||| ||||||||||||| |
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| T |
37727704 |
gctaacaatagttatatgtattcgattcatcagaaactatgggctttcctttttgtattgacgtggaattcaagt |
37727630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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