View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_21 (Length: 473)
Name: NF16240_low_21
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 27 - 473
Target Start/End: Original strand, 8566685 - 8567131
Alignment:
| Q |
27 |
gggagcatatcgagatgaatggaagaatttacatatgatgagttgttatatgtcaagtgtgaattataagtctcacttggatggaatacatgcaatgtat |
126 |
Q |
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| T |
8566685 |
gggagcataccgagatgaatggaggaatttacatatgatgagttgttatatgtcaagtgtgagttataagtcccacttgtatgaaatacatgcaatatat |
8566784 |
T |
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| Q |
127 |
gtgttagaagccccaccagaatgaactatccatgatctctttattttcttttattgtggtgtttcaaagtccaatctaattttattgcttttaagaaaaa |
226 |
Q |
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| T |
8566785 |
gtgttagaagccccaccaggatgaactatccatgatctctttattttcttttattgtggtgtttcaaagtccaatctaattttattgcttttaagaaaaa |
8566884 |
T |
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| Q |
227 |
tcaaggcaacaatatttatagaaagatagtggatattgttgaacttataagattagacaaggatttgtaaacattagagtagtctaaaaactcttggggt |
326 |
Q |
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| T |
8566885 |
tcaaggcaacaatatttatagaaagatagtggatattgttgaacttataagattagacaaggatttgtaaacatgagagtagtctataaactcttggggt |
8566984 |
T |
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| Q |
327 |
gacataggtaattggatttaatggattttaccaacataacaaccatgagagaagagggttatgtttgtaaagcacgtctttgtaccttgaagatgacatt |
426 |
Q |
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| T |
8566985 |
gacataggtaattggatttaatggattttagcaacataacaaccatgagagaagagggttatgtttgtaaagcacgtctttgtaccttgaagatgacatt |
8567084 |
T |
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| Q |
427 |
aattattttagagttaccttgccattatacttgaattcccataacaa |
473 |
Q |
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| T |
8567085 |
aattattttagagttaccttgccattatacttgaattcccataacaa |
8567131 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 42452252 - 42452316
Alignment:
| Q |
171 |
tttcttttattgtggtgtttcaaagtccaatctaattttattgcttttaagaaaaatcaaggcaa |
235 |
Q |
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| T |
42452252 |
tttcttttgttgtgggatttcaaagtccaatctaatcttatcgtttttaagaaaaatcaaagcaa |
42452316 |
T |
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