View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_22 (Length: 468)
Name: NF16240_low_22
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 118 - 450
Target Start/End: Original strand, 41922621 - 41922953
Alignment:
| Q |
118 |
attattgtgtacaactttggatttgataaactttcactttggaacttctaacgaaatcattgtactaccgattatatcgtcaaactcagtgtgacttcaa |
217 |
Q |
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| T |
41922621 |
attattgtgtacaactttggattcgacaaactttcactttgaaacttctaacgaaatcattgtactaccgattatatcgtcaaactcactgtgacttcaa |
41922720 |
T |
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| Q |
218 |
caagctcttattattaagaatttaagacatgttgaaaatgcttccaaattataaaattgaaatttcatttcaacatgttctaaggagataacatggtagt |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41922721 |
caagcgcttattattaagaatttaagacatgttgaaaatgcttccaaattataaaattgaaatttcatttcaacatgttctaaggagataacatggtagt |
41922820 |
T |
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| Q |
318 |
atccatctaaaaaacgtgtgacttattcaacatcaaaactgtcacttgccgagtgttttaactctataatttaaatcacatacaacataaatgaggaaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41922821 |
atccatctaaaaaacgtgtgacttattcaacatcaaaactgtcacttgccgagtattttaactctataatttaaatcacatacaacataaatgaggaaat |
41922920 |
T |
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| Q |
418 |
aacattatacaagaaaaaggtcatatatcaaag |
450 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
41922921 |
aacattatacaacaaaaaggtcatatatcaaag |
41922953 |
T |
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