View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_23 (Length: 458)
Name: NF16240_low_23
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 5829152 - 5829595
Alignment:
| Q |
1 |
ttaaatacactaatcttttaaaaatccagcacgctcttacattcaaaattcaattccaaaaggccgtaactactaaaacatattcttaaacttttgggaa |
100 |
Q |
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| T |
5829152 |
ttaaatacactaatcttttaaaaatccaacacgctcttacattcaaaattcaattccaagaggccgtaactactaaaacatattctcaaatttttgggaa |
5829251 |
T |
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| Q |
101 |
ctcaatagcggaaacttagtagcttaagaaggatgctcttgataccatgttaacaatgtagaaaattaaagagaatagagaataacaaaagagacagata |
200 |
Q |
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| T |
5829252 |
ctcaatagcggaaacttagtagtttaagaaggatgctcttgataccatgttaacaatatagaaaattaaagagaatagagaataacaaaagagacagtta |
5829351 |
T |
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| Q |
201 |
gggtttcaataatatcaaaaccataacacaacaaggttaaagtttcaatagaatatatagtaaaacctaaatggagtcaactaacttagaaaccagctag |
300 |
Q |
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| T |
5829352 |
gggtttcaataatattaaaaccataacacaacaaggttaaagtttcaatagaatatatagtaaaacctaaatggagtcaactaacttagaaaccagctag |
5829451 |
T |
|
| Q |
301 |
tcccagcagcataaactcaatgacttattatctaac--ttattttaacaaactcatgatttgttataagtgtctacagtgtatactttgatttgttaatt |
398 |
Q |
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| T |
5829452 |
taccagtagcctaaactcaatgacttattatctaaccattattttaacaaactcatgatttgttatacgtgtctacagtgtatactttgatttgttaatt |
5829551 |
T |
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| Q |
399 |
aacagtttatatatgatactttacatgttaaagtgagttgttca |
442 |
Q |
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| T |
5829552 |
aatagtttatatatgatactttacatgttaaagtgaattgttca |
5829595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 5827844 - 5827916
Alignment:
| Q |
199 |
tagggtttcaataatatcaaaaccataacacaacaaggttaaagtttcaatagaatatatagtaaaacctaaa |
271 |
Q |
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| T |
5827844 |
tagggttcaaataatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaa |
5827916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 38603046 - 38603075
Alignment:
| Q |
337 |
ttattttaacaaactcatgatttgttataa |
366 |
Q |
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| T |
38603046 |
ttattttaacaaactcatgatttgttataa |
38603075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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