View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_low_27 (Length: 423)

Name: NF16240_low_27
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_low_27
NF16240_low_27
[»] chr5 (6 HSPs)
chr5 (255-411)||(36961271-36961430)
chr5 (19-123)||(36961667-36961772)
chr5 (256-413)||(36944522-36944682)
chr5 (172-259)||(36961471-36961558)
chr5 (55-116)||(36944930-36944992)
chr5 (180-250)||(36944737-36944801)
[»] chr3 (3 HSPs)
chr3 (255-311)||(18721203-18721259)
chr3 (256-319)||(38853526-38853590)
chr3 (283-319)||(45460221-45460257)
[»] chr4 (1 HSPs)
chr4 (264-311)||(47017587-47017634)
[»] chr7 (2 HSPs)
chr7 (30-76)||(29663585-29663631)
chr7 (256-328)||(17902412-17902484)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 255 - 411
Target Start/End: Complemental strand, 36961430 - 36961271
Alignment:
Q  255 ctttttctaatattatttacattattagttaaacaatagttaaatttcattaaaataagaataattcaactacact---agnnnnnnntatattgttcgt 351  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||   |        ||||||||||||    
T  36961430 ctttttgtaatattatttacattattaattaaaaaatagttaaatttcattaaaataagaataattcaactacactaaaaaatatatatatattgttcgt 36961331  T
Q  352 ttattttaatcttatttgtcaaatttcttttgatgcatatatcaaatttgatatctcttc 411  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36961330 ttattttaatcttatttggcaaatttcttttgatgcatatatcaaatttgatatatcttc 36961271  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 36961772 - 36961667
Alignment:
Q  19 agtagagtattttggaattaatttaataattcctcaatataagacattctcaaa-taaagattaaacatataatcatattttagttctgaaaccaactac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36961772 agtagagtattttggaattaatttaataattcctcaatataagacattctcaaaataaagattaaacatataatcatattttagttctgaaaccaactac 36961673  T
Q  118 acatat 123  Q
    ||||||    
T  36961672 acatat 36961667  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 36944682 - 36944522
Alignment:
Q  256 tttttctaatattatttacattattag-ttaaacaatagttaaatttcattaaaataagaataattcaactacactagnnnnnnntatattgttcgttta 354  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||||| |||||||| ||||||||||||||||| |||        |||| |||| ||||    
T  36944682 tttttataatattatttacattattaaattaaaaaatagttaaattttattaaaattagaataattcaactacaataggaaaaaacatatagttcattta 36944583  T
Q  355 ttttaatcttatttgtcaaatttcttttgat--gcatatatcaaatttgatatctcttctt 413  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  36944582 ttttaatcttatttgccaaatttcttttgatgcgcatatatcaaatttgatatatcttctt 36944522  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 36961558 - 36961471
Alignment:
Q  172 atgattcatcaattttaacaatcttaaacttctcttgaatctataccactatgtaaaaatgatacatcaatttggactggtttctttt 259  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36961558 atgatacatcaattttaacaatcttgaacttcccttgaatctataccactatgtaaaaatgatacatcaatttggactggtttttttt 36961471  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 36944992 - 36944930
Alignment:
Q  55 atataagacattctcaaa-taaagattaaacatataatcatattttagttctgaaaccaacta 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  36944992 atataagacattctcaaaataaagattaaacatataatcatattttagtactgaaaccaacta 36944930  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 36944801 - 36944737
Alignment:
Q  180 tcaattttaacaatcttaaacttctcttgaatctataccactatgtaaaaatgatacatcaatttggactg 250  Q
    |||||||||||||||||||||||| |||||||| |||      ||||||||||||||||||||||||||||    
T  36944801 tcaattttaacaatcttaaacttcccttgaatcaata------tgtaaaaatgatacatcaatttggactg 36944737  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 18721203 - 18721259
Alignment:
Q  255 ctttttctaatattatttacattattagttaaacaatagttaaatttcattaaaata 311  Q
    |||||| |||||||| ||| ||||||| ||||| ||||||||||| |||||||||||    
T  18721203 ctttttataatattacttaaattattaattaaaaaatagttaaatctcattaaaata 18721259  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 38853590 - 38853526
Alignment:
Q  256 tttttctaatattatttacattattagttaaacaat-agttaaatttcattaaaataagaataat 319  Q
    ||||| |||||||||||| ||||| | ||||| ||| |||||||| ||||||||||| |||||||    
T  38853590 tttttataatattatttaaattatcaattaaaaaattagttaaatctcattaaaatatgaataat 38853526  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 45460221 - 45460257
Alignment:
Q  283 ttaaacaatagttaaatttcattaaaataagaataat 319  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  45460221 ttaaaaaatagttaaatttcattaaaatatgaataat 45460257  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 47017587 - 47017634
Alignment:
Q  264 atattatttacattattagttaaacaatagttaaatttcattaaaata 311  Q
    |||||||||| ||||||| ||||| ||||||||||| |||||||||||    
T  47017587 atattatttaaattattaattaaaaaatagttaaatctcattaaaata 47017634  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 29663585 - 29663631
Alignment:
Q  30 ttggaattaatttaataattcctcaatataagacattctcaaataaa 76  Q
    |||| |||||||||||||||| ||||||||||||||  |||||||||    
T  29663585 ttggtattaatttaataattcgtcaatataagacatgttcaaataaa 29663631  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 17902412 - 17902484
Alignment:
Q  256 tttttctaatattatttacattattagttaaacaatagttaaatttcattaaaataagaataattcaactaca 328  Q
    ||||| |||||||||||| ||  ||| ||||| || |||||||| |||||| |||| ||| ||||||||||||    
T  17902412 tttttataatattatttaaatatttaattaaaaaacagttaaatctcattataataggaacaattcaactaca 17902484  T

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