View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_28 (Length: 414)
Name: NF16240_low_28
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_28 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 49 - 396
Target Start/End: Complemental strand, 150514 - 150167
Alignment:
| Q |
49 |
tgagaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtg |
148 |
Q |
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| T |
150514 |
tgagaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtg |
150415 |
T |
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| Q |
149 |
acagtctaaaatagcttttaccaacttgttctctttcaccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacc |
248 |
Q |
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| T |
150414 |
aaagtctaaaatagcttttaccaacttgttctctttcaccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacc |
150315 |
T |
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| Q |
249 |
tgctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgtttttcctctactcattcccatctct |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
150314 |
tgctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgttttccctctactcattcccatctct |
150215 |
T |
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| Q |
349 |
tgttcagttcttgaagatgtttctgagcttgtttggtattgttctttc |
396 |
Q |
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| T |
150214 |
tgttcagttcttgaagatgtttctgagcttgtttggtattgttctttc |
150167 |
T |
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