View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_29 (Length: 399)
Name: NF16240_low_29
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 147 - 393
Target Start/End: Original strand, 2609075 - 2609321
Alignment:
| Q |
147 |
tacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataaatagaaccataaaaaagttccatccattatttttatcagtggaaaa |
246 |
Q |
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| T |
2609075 |
tacttctttggcagcaaaagcagtagcaccttctgtataaagataaagatagaaatagaaccataaaaatgttccatccattatttttatcagtggaaaa |
2609174 |
T |
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| Q |
247 |
gtaaataagcaacttataataaagagtttatgaatactatatttactttgaattcaagtcattttgcaatcaaaacatggagattggaaaattccattgt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2609175 |
gtaaataagcaacttataataaagagtttatgaatacaacatatactttgaattcaagtcattttgcaatcaaaacatggagattggacaattccattgt |
2609274 |
T |
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| Q |
347 |
tttaacaaatgtaaccttgtaaattttataactattattcttttcac |
393 |
Q |
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| T |
2609275 |
tttaacaaatgtaaccttgtaaattttataactattattcttttcac |
2609321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 2606692 - 2606824
Alignment:
| Q |
17 |
cagatgtttcagtacatatgaccaatggaaaataaatagcaagtccatggataaaccaaacttttattgtatctctaatttaaaagaaatatgaaatttg |
116 |
Q |
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| T |
2606692 |
cagatgtttcagtacatatgagcaatggaaaataaatagcaagtctatggataaaccaaacttttattgcatctctaatttaaaagaaatatgaaatttg |
2606791 |
T |
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| Q |
117 |
attgattaaaccactgaacacattgccaagtac |
149 |
Q |
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| T |
2606792 |
attgattaaaccactaaacacattgccaagtac |
2606824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 282
Target Start/End: Original strand, 2575209 - 2575364
Alignment:
| Q |
123 |
taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataaatagaaccataaaaaagttcca |
222 |
Q |
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||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |
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| T |
2575209 |
taaaccagtgaacacattgccaagtacttatttggaagcaaaagcaatagcaactcctgtataaagataaagatagaaatagaaccatgaaaattttcca |
2575308 |
T |
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| Q |
223 |
tccattatttttatcagtggaaaagtaaataagcaacttataataaagagtttatgaata |
282 |
Q |
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||| |||||||||||| | | |||||| ||||||||| ||||||| |||||||||||| |
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| T |
2575309 |
tcccttatttttatcaat--agaagtaattaagcaact--taataaaaagtttatgaata |
2575364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 11084587 - 11084721
Alignment:
| Q |
123 |
taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataa-atagaaccataaaaaagttcc |
221 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| ||| || ||||||| || |||| |||| |
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| T |
11084587 |
taaaccgctgaacacattgccaagtacgtctctggcagcaaaagcagtagcaactcctgtat-aagataaa-ataaaatatagaacaatgaaaattttcc |
11084684 |
T |
|
| Q |
222 |
atccattatttttatcagtggaaaagtaaataagcaac |
259 |
Q |
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|| | || || ||||||| ||||||||||||||||||| |
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| T |
11084685 |
atacctt-ttcttatcagcggaaaagtaaataagcaac |
11084721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 22203679 - 22203591
Alignment:
| Q |
123 |
taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaag-ataaagatataaatagaaccat |
210 |
Q |
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|||||||||| |||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| | ||||||| |||||||||||| |
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| T |
22203679 |
taaaccactgcacacattgccaagtacttcttttggagcaaaagcagtagcaactcttgtataaagaaaaaagatagaaatagaaccat |
22203591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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