View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_30 (Length: 398)
Name: NF16240_low_30
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_30 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 29086309 - 29086589
Alignment:
| Q |
14 |
gatttagtctggtttggaaacttgatttttagagggcatgtaagatggattagtatgttgattcttcattatcagttttattttgtattttagactactg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29086309 |
gatttagtctggtttggaaacttgatttttagagggcatgtaagatggattagtatgttgattcttcatgatcagttttattttgtattttagactactg |
29086408 |
T |
|
| Q |
114 |
tagaaatgttgtttcatttatcatgatatctaagagcacacaaaagatgagtagttttaaaaatagtgtacaaatttggttttacaaaacagcttcaagt |
213 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29086409 |
tagaaatgttgtttcgtttttcatgatatctaagagcacacaaaagatgagtagttttaaaaatagtgtatgaatttggttttacaaaacagcttcaagt |
29086508 |
T |
|
| Q |
214 |
cttcacttcattgtagtctatccattttgtttcacttgaatcctggtattattgctaaaatgttttttcatagaaaagtga |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29086509 |
cttcacttcattgtagtctatccattttgtttcacttgaatcctggtattattgataaaatgttttttcatagaaaagtga |
29086589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 29931563 - 29931885
Alignment:
| Q |
1 |
tgaggactgaggagatttagtctggtttggaaacttgatttttagagggcatgtaagatggattagtatgttgattcttcattatcagttttattttgta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29931563 |
tgaggactgaggagatttagtctagtttggaaacttgatttttagagggcatgtaagatggattagtatgttgattcttcattatcagttttattttgta |
29931662 |
T |
|
| Q |
101 |
ttttagactactgtagaaatgttgtttcatttatcatgatatctaagagcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttaca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
29931663 |
ttttagactactgtagaaatgttgtttcgttttccatgatatctatgagcacacaaaagatgagtagatttagaaaatagtgtacgaatttggttttaca |
29931762 |
T |
|
| Q |
200 |
aaacagcttcaagtcttcacttcattgtagtctatccattttgtttcacttgaatcctggtattattgctaaa--atgttttttcatagaaaagtgaagc |
297 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
29931763 |
aaacaacttcaagtcttcacttcactgtagtctatccattttgtttagcttgaatcctggtattattgataaatgat-ttttttcatagaaaagtgaagc |
29931861 |
T |
|
| Q |
298 |
aatcaagaaaccattatggctctt |
321 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
29931862 |
aatcaagaaaccaatatggctctt |
29931885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 141 - 369
Target Start/End: Complemental strand, 24257796 - 24257567
Alignment:
| Q |
141 |
atctaagagcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttacaaaacagcttcaagtcttcacttcattgtagtctatccatt |
239 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
24257796 |
atctatgagcacacaaaagatgagtagatttagaaaatagtgtacgaatttggttttacaaaacaacttcaagtcttcacttctttgtagtctatccatt |
24257697 |
T |
|
| Q |
240 |
ttgtttcacttgaatcctggtattattgctaaaatgttttttcatagaaaagtgaagcaatcaagaaaccattatggctcttcacatttccagagggtgt |
339 |
Q |
| |
|
|| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24257696 |
ttctttcgcttgaatcctggtattattgataaaagattttttcatagaaaagtgaagcaatcaagaaaccaatatggctcttcacatttccagagggtgt |
24257597 |
T |
|
| Q |
340 |
gttgatcaagtggcacctattcgagatatt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24257596 |
gttgatcaagtggcacctattcgagatatt |
24257567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 148 - 380
Target Start/End: Complemental strand, 29346051 - 29345816
Alignment:
| Q |
148 |
agcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttacaaaacagcttcaagtcttcact--tcattgtagtctatccattttgtt |
244 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| | ||| ||| ||||||| ||| |||| || |||||||||||| |
|
|
| T |
29346051 |
agcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaagaaaaaactttaagccttcactcttcactgtaatcgatccattttgtt |
29345952 |
T |
|
| Q |
245 |
tcacttgaatcctggtattattgctaaaatgttttttcatagaaaagtgaagcaatcaagaaaccattatggctcttcacatttccagagggtgtgttga |
344 |
Q |
| |
|
|| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
29345951 |
tcgcttgaatcctggtattattgattaaacattttg-catagaaaagtgaaggaatcaggaaaccagtatggttcttcacaattccagagggtgtgttga |
29345853 |
T |
|
| Q |
345 |
tcaagtggcacctattcgagata-tttctcatttttc |
380 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29345852 |
tcaagtggcacctattcgagatattttctcatttttc |
29345816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 380
Target Start/End: Original strand, 29888465 - 29888706
Alignment:
| Q |
148 |
agcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttacaaaacagcttcaagtcttcact-------tcattgtagtctatccatt |
239 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
29888465 |
agcatacaaaagatgagtagatttagaaaatagtgtacaaatttggttttacgaaacaacttttagtcttcactcttcacttcagtgtaacctatccatt |
29888564 |
T |
|
| Q |
240 |
ttgtttcacttgaatcctggtattattgctaaaatgtttttt-catagaaa-agtgaagcaatcaagaaaccattatggctcttcacatttccagagggt |
337 |
Q |
| |
|
||||||| ||||| |||||||||||||| | | || |||| ||||||| ||| ||| |||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29888565 |
ttgtttcgcttgactcctggtattattgatta--tgcattttgcatagaatcagtaaaggaatcgagaaaccagtatggttcttcacatttccagagggt |
29888662 |
T |
|
| Q |
338 |
gtgttgatcaagtggcacctattcgagata-tttctcatttttc |
380 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
29888663 |
gtgttgatcaagtggcgcctattcgagatattttctcatttttc |
29888706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 370
Target Start/End: Complemental strand, 24270766 - 24270536
Alignment:
| Q |
148 |
agcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttacaaaacagcttcaagtcttcact-------tcattgtagtctatccatt |
239 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
24270766 |
agcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttacgaaacaacttttagtcttcactcttcacttcagtgtaacctatccatt |
24270667 |
T |
|
| Q |
240 |
ttgtttcacttgaatcctggtattattgctaaaatgttttttcatagaaa-agtgaagcaatcaagaaaccattatggctcttcacatttccagagggtg |
338 |
Q |
| |
|
||| ||| ||||| |||||||||||||| | || |||| ||||||| || |||| |||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
24270666 |
ttgattcgcttgactcctggtattattgattaagcattttg-catagaatcagcgaaggaatcgagaaaccagtatggttcttcacatttccagagggtg |
24270568 |
T |
|
| Q |
339 |
tgttgatcaagtggcacctattcgagatattt |
370 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |
|
|
| T |
24270567 |
tgttgatcaaatggtacctattcgagatattt |
24270536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 29086589 - 29086654
Alignment:
| Q |
323 |
acatttccagagggtgtgttgatcaagtggcacctattcgagatatttctcatttttcggtctctg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29086589 |
acatttccagagggtgtgttgatcaagtggcacctattcgagatatttctcatttttcggtctctg |
29086654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 29900486 - 29900559
Alignment:
| Q |
32 |
aacttgatttttagagggcatgtaagatggattagtatgttgattcttcattatcagttttattttgtatttta |
105 |
Q |
| |
|
||||| |||||| ||||||||||||||||| || |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
29900486 |
aactttattttttgagggcatgtaagatggttttgtatgttgattctttattatcagttctattttgtatttta |
29900559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 29354309 - 29354252
Alignment:
| Q |
55 |
aagatggattagtatgttgattcttcattatcagttttattttgtattttagactact |
112 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
29354309 |
aagatggttttgcatgttgattcttcattatcagttctattttgtattttaaactact |
29354252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 24260236 - 24260158
Alignment:
| Q |
38 |
atttttagagggca-tgtaagatggatta-gtatgttgattcttcattatcagttttattttgtattttagactactgt |
114 |
Q |
| |
|
||||||| |||||| |||||||||| || |||||||||||||||||||| | || |||||||||||||| |||||||| |
|
|
| T |
24260236 |
atttttatagggcaatgtaagatggtttttgtatgttgattcttcattattacttctattttgtattttaaactactgt |
24260158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 380
Target Start/End: Complemental strand, 52386 - 52145
Alignment:
| Q |
147 |
gagcacacaaaagatgagtagtttta-aaaatagtgtacaaatttggttttacaaaacagcttcaagtcttcact--tcattgtagtctatccattttgt |
243 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||| || ||||||| ||| |||| || ||||||||||| |
|
|
| T |
52386 |
gagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaagaaacaactttgagccttcactcttcactgtaatcaatccattttgt |
52287 |
T |
|
| Q |
244 |
ttcacttgaatcctggtattattgctaaaatgttttttcatagaaaagtga-----agcaatcaagaaaccattatggctcttcacatttccagagggtg |
338 |
Q |
| |
|
||| |||| |||||||||||||| | || |||| ||||||||||||| || ||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
52286 |
ttcgcttgtttcctggtattattgattaagcattttg-catagaaaagtgatgttaaggaatcacgaaaccagtatggttcttcacatttccagagggtg |
52188 |
T |
|
| Q |
339 |
tgttgatcaagtggcacctattcgagata-tttctcatttttc |
380 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
52187 |
tgttgatcaagtggcccctattcgagatattttctcatttttc |
52145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University