View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_31 (Length: 397)
Name: NF16240_low_31
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 47950363 - 47950096
Alignment:
| Q |
6 |
cagagaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaacaacaagaccta |
105 |
Q |
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| T |
47950363 |
cagagaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaactacaagaccta |
47950264 |
T |
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| Q |
106 |
tcaagaggggaaaatatatagcacttgatactgtcaaaattgcag---ataactatgatcagaagtgagacaaatatcatgtttggatttctaatgactt |
202 |
Q |
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| T |
47950263 |
tcaagaggggaaaatatatagcacttgatactgtcaaaattgcagataataactacgatcagaagtgagacaaatatcatgtttggatttctaatgactt |
47950164 |
T |
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| Q |
203 |
gttgttagaggaatacatattaatgttttggttatt-----aagtcaaactatggaaacagagatatt |
265 |
Q |
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| T |
47950163 |
gttgttagaggaatacatattaatgttttggttattaagtcaagtcaaactatggaaacagagatatt |
47950096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 47950058 - 47949968
Alignment:
| Q |
260 |
gatatttatgtgtgtattacacttatgaataatggcaggcttacctttgttgtaagttttttgccctaagtttgggtcaggatcatctcaa |
350 |
Q |
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| T |
47950058 |
gatatttatgtgtgtattacacttatgaataatggcaggcttacctttgttgtaagttttttgccctaagtttgggtcaggatcctctcaa |
47949968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 47957712 - 47957569
Alignment:
| Q |
10 |
gaacgaaattggaccggttgaagacctaataaacgagacatatccaaggttgtacagaaacgtaaaaaattattgtgaaatgaacaacaagacctatcaa |
109 |
Q |
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| T |
47957712 |
gaacgaaattggacctgttgaaggactggtaaatgagaaacgtccaagggtgtataaaaatgtcaaaaattatggtgatattaactataggtgctatcaa |
47957613 |
T |
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| Q |
110 |
gaggggaaaatatatagcacttgatactgtcaaaattgcagataacta |
157 |
Q |
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| T |
47957612 |
gaggggaaaatt----gcacttgatactgtcaaaatgacagataacta |
47957569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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