View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_32 (Length: 372)
Name: NF16240_low_32
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 4388210 - 4387972
Alignment:
| Q |
18 |
actaggagcccccttcccctaggaaccggaagcttaacacacnnnnnnnnnttaaaattcttccgcccaccaaacacttctttgtgttttatgggtgcct |
117 |
Q |
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| T |
4388210 |
actaggagcccccttcccctaggaaccggaagcttaacaca--aaaaaaaattaaaattcttccgcccaccaaacacttctttgtgtgttatgggtgcct |
4388113 |
T |
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| Q |
118 |
cttttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgactccaatcaaacaatttgttgaatcatggagaaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4388112 |
cttt-gttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgactccaatcaaacaatttgtttaatcatggagaaa |
4388014 |
T |
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| Q |
218 |
gcaaaacatagtaagccgaggaacaagttctttacagaagca |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388013 |
gcaaaacatagtaagccgaggaacaagttctttacagaagca |
4387972 |
T |
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