View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_35 (Length: 367)
Name: NF16240_low_35
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 222 - 362
Target Start/End: Original strand, 38269690 - 38269830
Alignment:
| Q |
222 |
tatgctaatggagatagaattgtataattaatttacctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagttt |
321 |
Q |
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| T |
38269690 |
tatgctaatggagatagaattgtataattaatttacctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagttt |
38269789 |
T |
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| Q |
322 |
ttcatcttcttctggtgaccatagacctttcctatgcttct |
362 |
Q |
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| T |
38269790 |
ttcatcttcttctggtgaccatagacctttcctaagcttct |
38269830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 38269483 - 38269614
Alignment:
| Q |
19 |
tattccccagaactgcatgaagttcaacaatgaggttttcttcctcttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccacctaag |
118 |
Q |
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| T |
38269483 |
tattccccagaactgcatgaagttcaacaatgagattttcttcctcttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccacctaag |
38269582 |
T |
|
| Q |
119 |
cctgcagctcttaccacatctttgcaaacctg |
150 |
Q |
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| T |
38269583 |
cctgcagctcttaccacatctttgcaaacctg |
38269614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 37962942 - 37962857
Alignment:
| Q |
65 |
ttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccacctaagcctgcagctcttaccacatctttgcaaacctg |
150 |
Q |
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| T |
37962942 |
ttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacctg |
37962857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 45438126 - 45438003
Alignment:
| Q |
19 |
tattccccagaactgcatgaagttcaacaatgaggttttcttcctcttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccacctaag |
118 |
Q |
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||||||| || |||| ||||||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
45438126 |
tattccctagtactgaatgaagttcaatgatgagattttcttcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccacctaag |
45438027 |
T |
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| Q |
119 |
cctgcagctcttaccacatctttg |
142 |
Q |
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| T |
45438026 |
cctacagctcttaccacatctttg |
45438003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 45437872 - 45437765
Alignment:
| Q |
255 |
tacctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagtttttcatcttcttctggtgaccatagacctttcct |
354 |
Q |
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| T |
45437872 |
tacctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcct |
45437773 |
T |
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| Q |
355 |
atgcttct |
362 |
Q |
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| |||||| |
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| T |
45437772 |
aagcttct |
45437765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 19877216 - 19877172
Alignment:
| Q |
283 |
acatccatgaccatactttgttatatgcctcagtagtttttcatc |
327 |
Q |
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| T |
19877216 |
acatccatgaccatactttgttatatgctttagtagtttttcatc |
19877172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 5690743 - 5690643
Alignment:
| Q |
30 |
actgcatgaagttcaacaatgaggttttcttcctcttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccacctaagcctgcagctct |
129 |
Q |
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|||||||||||||||| || | || ||||| | ||||||||||| ||||||||| |||||||| |||||||||| ||||| || | |||||| |||| |
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| T |
5690743 |
actgcatgaagttcaatgatcaaattctcttcttattgtgagaatgctcctcttttcaaatcaggcgttaagtaatttatccatcttaacctgcatctct |
5690644 |
T |
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| Q |
130 |
t |
130 |
Q |
| |
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| T |
5690643 |
t |
5690643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 42789125 - 42789153
Alignment:
| Q |
317 |
agtttttcatcttcttctggtgaccatag |
345 |
Q |
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| T |
42789125 |
agtttttcatcttcttctggtgaccatag |
42789153 |
T |
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