View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_37 (Length: 357)
Name: NF16240_low_37
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 55163684 - 55163359
Alignment:
| Q |
20 |
atcagagtggttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaaaagttaaggaggttcataaataaaaattaagt |
119 |
Q |
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| T |
55163684 |
atcagagtggttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaa--gttaaggaggttcataaataaaaattaagt |
55163587 |
T |
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| Q |
120 |
cacagtgtcacagggacatgtttagtttcttcacctctacatagagagaaagttgaatctatagtcttgttgcgatactcgaccctaattctatattctc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55163586 |
cacagtgtcacagggacatgtttagtttcttcacctctacatagagagaaagttgaatttatagtcttgttgcgatactcgaccctaattctatattctc |
55163487 |
T |
|
| Q |
220 |
ctaagaatccataaaagctatttgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtttatccaccacatcacctga |
319 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55163486 |
ctaagaatccataaaagctatgtgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtttatccaccacatcacctga |
55163387 |
T |
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| Q |
320 |
tggtaagttgttgaaatcattgtctgtg |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
55163386 |
tggtaagttgttgaaatcattgtctgtg |
55163359 |
T |
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