View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_38 (Length: 352)
Name: NF16240_low_38
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 12702339 - 12702670
Alignment:
| Q |
2 |
taatataaacaccgtaataattgttttgtaggaaaaatatagtttccctttttgtaagcatcaaaagctgttttcttttgtcaaaagccatccaaagctt |
101 |
Q |
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| T |
12702339 |
taatataatcaccgtaatacttgtattgta----atatatagtttccctttttgtaagcatcaaaagctgttttcttttgtcaaatgccatccaaagctt |
12702434 |
T |
|
| Q |
102 |
ttcacaaaacacattattatattgtttgagatttttattttgtgcttttcttatactgcagtccatatagaaaaatagtagtttttgcatatatttgtct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12702435 |
ttcacaaaacacattattatattgtttgagatttttattttgtgcttttcttatactgcagtccatatagaaaaatagtagtttttgcatatatttgtct |
12702534 |
T |
|
| Q |
202 |
aaaagcatatatgctctttccgtttattctttcattatcaaaggaatcttatttagaatgttgatgttgtaactaagatgttgcataattcttgctgaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12702535 |
aaaagcatatatgctctttccgtttattctttcattatcaaaggaatcttatttagaatgttgatgttgtaactaagatgttgcataattcttgctgaat |
12702634 |
T |
|
| Q |
302 |
ttaaatttacactagactaataaagtgtgaagtaaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12702635 |
ttaaatttacactagactaataaagtgtgaagtaaa |
12702670 |
T |
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