View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_4 (Length: 712)
Name: NF16240_low_4
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 683
Target Start/End: Original strand, 55336797 - 55337457
Alignment:
| Q |
19 |
gtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagata |
118 |
Q |
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| T |
55336797 |
gtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagata |
55336896 |
T |
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| Q |
119 |
cagaatctaagatagcatagagttgcacggtgttggagttattgattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnn |
218 |
Q |
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| T |
55336897 |
cagaatctaagatagcatagagttgcacggtgttggagttattgattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacattttt |
55336996 |
T |
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| Q |
219 |
nncaagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttggg |
318 |
Q |
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| T |
55336997 |
ttcaagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttggg |
55337096 |
T |
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| Q |
319 |
aaatggattgaggcattcacatttcctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacg |
418 |
Q |
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| T |
55337097 |
aaatggattgaggcattcacattacctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacg |
55337196 |
T |
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| Q |
419 |
tatgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgt |
518 |
Q |
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| T |
55337197 |
tatgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtttatata-----tatactattgtgacagggaggatgagtgcaacttgtaatgt |
55337291 |
T |
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| Q |
519 |
tatagttttattcaattttttaagac-aagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtataca |
617 |
Q |
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| T |
55337292 |
tatagttttattcaattttttagtacaaagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtataca |
55337391 |
T |
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| Q |
618 |
cacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
683 |
Q |
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| T |
55337392 |
cacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 55331359 - 55331485
Alignment:
| Q |
19 |
gtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagata |
118 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||||| || || ||| ||||||||||| |||||||| |||| |
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| T |
55331359 |
gtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgttccaattctgtcgctgttggctgaggttgttgtgcatttcgattctgtcggata |
55331458 |
T |
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| Q |
119 |
cagaatctaagatagcatagagttgca |
145 |
Q |
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| T |
55331459 |
cagaatctaaaattgcatagagttgca |
55331485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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