View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_low_40 (Length: 348)

Name: NF16240_low_40
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_low_40
NF16240_low_40
[»] chr1 (1 HSPs)
chr1 (10-348)||(38944754-38945088)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 38944754 - 38945088
Alignment:
Q  10 ccaataatatcaccataaattagtaattaatatctttgagcttccaaagttcaaccaatattaggtactacctccggtcctatagtataaagtttggtca 109  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||  |||||||||||||||||||||||    
T  38944754 ccaacaatatcaccataaattagtaattaatatctttgaacttccaaagttcaaccaata---ggtactacctccaatcctatagtataaagtttggtca 38944850  T
Q  110 aca-aagaagtagatatcaacttctattggctcaactttttcgtaaataaaatctagttaaggattgttttggtcagaattcaactcaactttttcaaac 208  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  38944851 acagaagaagtagatatcaacttctattgactcaactttttcgtaaataaaatctagttaaggattgtcttagtcagaattcaactcaactttttcaaac 38944950  T
Q  209 catannnnnnnnacctgttccaattgttttcacattttaccatacaattgactaattgtcttttccactaaaatggtgcttgaaacgaaaaagttaccga 308  Q
    ||||        |  ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38944951 catatttttttaa--tgttccaattgttttcacattttaccataaaatttactaattgtcttttccactacaatggtgcttgaaacgaaaaagttaccga 38945048  T
Q  309 gtatcaagatgtgaaaactgagcaattaaagttgattgtc 348  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  38945049 gtatcaagatgtgaaaactgagcaattaaggttgattgtc 38945088  T

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