View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_low_41 (Length: 343)

Name: NF16240_low_41
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_low_41
NF16240_low_41
[»] chr5 (7 HSPs)
chr5 (6-328)||(10100766-10101090)
chr5 (176-328)||(9678765-9678917)
chr5 (173-328)||(10104738-10104893)
chr5 (173-326)||(10214458-10214611)
chr5 (176-268)||(9679047-9679139)
chr5 (176-268)||(9679269-9679361)
chr5 (173-269)||(10107553-10107649)
[»] chr7 (6 HSPs)
chr7 (169-328)||(1470495-1470654)
chr7 (270-328)||(34906377-34906435)
chr7 (270-328)||(34913890-34913948)
chr7 (261-301)||(8959345-8959385)
chr7 (271-299)||(33032674-33032702)
chr7 (271-299)||(33120234-33120262)
[»] chr1 (1 HSPs)
chr1 (174-321)||(35121793-35121940)
[»] chr4 (3 HSPs)
chr4 (181-295)||(16622651-16622765)
chr4 (261-313)||(7600996-7601048)
chr4 (211-240)||(1199605-1199634)
[»] scaffold0036 (1 HSPs)
scaffold0036 (270-328)||(19707-19765)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 10100766 - 10101090
Alignment:
Q  6 cacagacaacaagaaccttccatgtcctctttgggcaaggtaaacattttcattccctttccaaaaatctttcatttttatggtgcgattcgtagtaaaa 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  10100766 cacaaacaacaagaaccttccatgtcctctttgggcaaggtaaacattttcattccctttccaaaaatctctcatttttatggtgcgatttgtagtaaaa 10100865  T
Q  106 atgtgcaatgttagtacttccatgtgatttt-acgggttgtgtcacnnnnnnnnnnnnnnnnnng-gttgttttgagtctgtcagacaaccgtgtaacca 203  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||                    ||||||||||||||||||||||||||||| ||||    
T  10100866 atgtgcaatgttagtacttctatgtgatttttacgggctgtgtcacaaaaaacatgaaaaaaaaaagttgttttgagtctgtcagacaaccgtgtgacca 10100965  T
Q  204 tctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccgttaatcacgctctgatcacacggtcatggt 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10100966 tctcagtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccgttaatcacgctctgatcacacggtcatggt 10101065  T
Q  304 tcatccaccagacgtatgttcctgt 328  Q
    |||||||||||||||||||||||||    
T  10101066 tcatccaccagacgtatgttcctgt 10101090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 9678917 - 9678765
Alignment:
Q  176 ttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccgtt 275  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  9678917 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcctagccgtt 9678818  T
Q  276 aatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  9678817 aatcacgctctgatcacacagtcatgattcatccaccagacgtatgttcctgt 9678765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 173 - 328
Target Start/End: Original strand, 10104738 - 10104893
Alignment:
Q  173 gttttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggcc 272  Q
    ||||| ||||||  |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10104738 gttttcagtctgaaagacaaccgtgtgaccatctcagtcagttgaactaagccaagaacgatcatctacagctgaagatgatgcacacatcatccaggcc 10104837  T
Q  273 gttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10104838 gttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgctcctgt 10104893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 173 - 326
Target Start/End: Complemental strand, 10214611 - 10214458
Alignment:
Q  173 gttttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggcc 272  Q
    ||||||| |||||||||||||| ||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10214611 gttttgaatctgtcagacaaccatgtgaccatcccggttagttgaactaggccaagaacgatcatctacagctgaagatgatgcacacatcatcctggcc 10214512  T
Q  273 gttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcct 326  Q
    |||||||||||||||||||||||||||    ||||| ||||||| |||||||||    
T  10214511 gttaatcacgctctgatcacacggtcacaactcatctaccagacatatgttcct 10214458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 9679139 - 9679047
Alignment:
Q  176 ttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcct 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9679139 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcct 9679047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 9679361 - 9679269
Alignment:
Q  176 ttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcct 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9679361 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcct 9679269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 269
Target Start/End: Original strand, 10107553 - 10107649
Alignment:
Q  173 gttttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctg 269  Q
    |||||||||||||||||||||| ||| |||||| ||| ||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  10107553 gttttgagtctgtcagacaaccatgtgaccatcccggccagttgaacaaggacgggaacgatcacctacagctgaagatgatgcacacatcatcctg 10107649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 1470495 - 1470654
Alignment:
Q  169 ggttgttttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcct 268  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  1470495 ggttgttttgagtctgtcagacaaccgtgtgaccatctcagtcagttgaactaggccaagaacgatcatctacagctgaagatgatgcacacatcatcat 1470594  T
Q  269 ggccgttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1470595 ggccgttaatcatgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 1470654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 34906435 - 34906377
Alignment:
Q  270 gccgttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    ||||||||||||||||||||| ||||||| |  ||||||  ||||||||||||||||||    
T  34906435 gccgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgt 34906377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 34913890 - 34913948
Alignment:
Q  270 gccgttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    ||||||||||||||||||||| ||||||| |  ||||||  ||||||||||||||||||    
T  34913890 gccgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgt 34913948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 8959385 - 8959345
Alignment:
Q  261 atcatcctggccgttaatcacgctctgatcacacggtcatg 301  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  8959385 atcatcttggtcgttaatcacgctctgatctcacggtcatg 8959345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 33032674 - 33032702
Alignment:
Q  271 ccgttaatcacgctctgatcacacggtca 299  Q
    |||||||||||||||||||||||||||||    
T  33032674 ccgttaatcacgctctgatcacacggtca 33032702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 33120234 - 33120262
Alignment:
Q  271 ccgttaatcacgctctgatcacacggtca 299  Q
    |||||||||||||||||||||||||||||    
T  33120234 ccgttaatcacgctctgatcacacggtca 33120262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 35121793 - 35121940
Alignment:
Q  174 ttttgagtctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccg 273  Q
    |||| ||||||||||||||| |||| |||||| || ||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||  ||    
T  35121793 tttttagtctgtcagacaactgtgtgaccatcccgatcagttgaactagactgagaacgatcatctacaactgaagacgatgcacacatcatcatgatcg 35121892  T
Q  274 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatg 321  Q
    ||||||| ||| ||||||||||||||||||||||||||| || |||||    
T  35121893 ttaatcatgctttgatcacacggtcatggttcatccacctgatgtatg 35121940  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 16622651 - 16622765
Alignment:
Q  181 tctgtcagacaaccgtgtaaccatctcggtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccgttaatca 280  Q
    |||||||||||||| ||| |||||| |  ||||||||  ||||||||||||||| ||||||| || ||| ||||  | |||| ||||||| ||||||| |    
T  16622651 tctgtcagacaaccatgtgaccatccctatcagttgatataggccgagaacgataatctacaactaaagttgatatatacattatcctggtcgttaatta 16622750  T
Q  281 cgctctgatcacacg 295  Q
    |||| ||||||||||    
T  16622751 cgctttgatcacacg 16622765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 7601048 - 7600996
Alignment:
Q  261 atcatcctggccgttaatcacgctctgatcacacggtcatggttcatccacca 313  Q
    |||||| |||||||||||||| |||||||| |||||||||| |||||||||||    
T  7601048 atcatcttggccgttaatcactctctgatctcacggtcatgattcatccacca 7600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 1199634 - 1199605
Alignment:
Q  211 cagttgaactaggccgagaacgatcatcta 240  Q
    ||||||||||||||||||||||||||||||    
T  1199634 cagttgaactaggccgagaacgatcatcta 1199605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 19765 - 19707
Alignment:
Q  270 gccgttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgt 328  Q
    ||||||||||||||||||||| ||||||| | |||||||  | |||| |||||||||||    
T  19765 gccgttaatcacgctctgatctcacggtcttcgttcatcatctagacatatgttcctgt 19707  T

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