View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_51 (Length: 295)
Name: NF16240_low_51
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 587067 - 586807
Alignment:
| Q |
18 |
aaagattgtgtacgaccaatgaataaagagaaaacaattcaaagctaacttttattcaggactctatataatgagatgtctcataaatcaaatggagtac |
117 |
Q |
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| T |
587067 |
aaagattgtgtaagaccaatgaataaagagaaa-caattgaaagctaacttttattcaggactctatataatgagatgtctcataaatcaaatggagtac |
586969 |
T |
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| Q |
118 |
tatggtattacctcacaacaacatatggtttgaaaccataatttaatcaccataagtgtgtcaaaattgaaggtgaacaattgctgaccactttgcacat |
217 |
Q |
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| T |
586968 |
tatggtattacctcacaacaacatatggtttgaaaccataatttaatcaccataagtgtgtcaaaattgaaggtgaacaattgctgaccactttgcacat |
586869 |
T |
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| Q |
218 |
tccatagcttcactgtctggtcagcactgccggtaatgagtcgacccgaatctagtgcaacc |
279 |
Q |
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| T |
586868 |
tccatagcttcactgtctggtcagcactgccggtaatgagtcgacccgaatctagtgcaacc |
586807 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 36869441 - 36869350
Alignment:
| Q |
178 |
tcaaaattgaaggtgaacaattgctgaccactttgcacattccatagcttcactgtctggtcagcactgccggtaatgagtcgacccgaatc |
269 |
Q |
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| T |
36869441 |
tcaaaattaaaagtaaacaactgctgaccagtctgcacattccacaacttagcagtctgatcagcactgccggtaataagccgaccggaatc |
36869350 |
T |
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