View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_58 (Length: 268)
Name: NF16240_low_58
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 43232236 - 43232410
Alignment:
| Q |
49 |
tctctcttatctaaccctctccatctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgta |
148 |
Q |
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| T |
43232236 |
tctctcttatctaaccccctccatctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttgttgta |
43232335 |
T |
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| Q |
149 |
tacataccgtttatttataagtttgtgttatgtttttatttctcctttttccttcttaaagctgcagtcttataa |
223 |
Q |
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| T |
43232336 |
tacataccctttatttataagtttgtgttatgtttttatttctcttttttccttcttaaagctgcagtcttataa |
43232410 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 29362170 - 29362302
Alignment:
| Q |
83 |
cttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccgtttatttataagtttgtgttatgtt |
182 |
Q |
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|||||||||| |||| | ||| |||| || ||||||||||||| |||| ||||||||| ||| |||||| ||||||||||| |||||||| | || |
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| T |
29362170 |
cttctttacttcaacattttcttaggtgagttttgtttcatttaacttcatccttgtttt----tatgcataccctttatttataactttgtgttttctt |
29362265 |
T |
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| Q |
183 |
tttatttctcctttttccttcttaaagctgcagtctt |
219 |
Q |
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| T |
29362266 |
tattcttctcttttttccttctgaaagttgcaatctt |
29362302 |
T |
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