View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_6 (Length: 630)
Name: NF16240_low_6
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 614
Target Start/End: Complemental strand, 39527679 - 39527057
Alignment:
| Q |
11 |
agtgagaagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagc |
110 |
Q |
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| T |
39527679 |
agtgataagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagc |
39527580 |
T |
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| Q |
111 |
actggctgactaaatggagtatagtccaacatatgggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaa |
210 |
Q |
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| T |
39527579 |
actggctgactaaatggagtatagtccaacataagggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaa |
39527480 |
T |
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| Q |
211 |
cacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttatt---------------------acacttaactgt |
289 |
Q |
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| T |
39527479 |
cacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttatttctgttgtgtaaaattgttttacacttaactgt |
39527380 |
T |
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| Q |
290 |
tattatttgagattaattattatgcattctttaagattgatatttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaagtt |
389 |
Q |
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| T |
39527379 |
tattatttgagattaattattatgcattctttaagattgatgtttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaagtt |
39527280 |
T |
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| Q |
390 |
agctccccagtccctacctctctttgtgttttctattgtacactatgctctgtttgcttgtggaattagtttgcttagnnnnnnnatatcaaactatgcg |
489 |
Q |
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| T |
39527279 |
agctccccagtccctacctctct--gtgttttctattgtacactatgctctgtttgcttgtggaattagtttgcttagttttttaatatcaaactatgcg |
39527182 |
T |
|
| Q |
490 |
gcataaatcaaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcatttcttaacactaacaagtgggttgaggaggtacgtg |
589 |
Q |
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| T |
39527181 |
gcataaatcaaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcatttcttaacactaacaagtgggttgaggaggtacgtg |
39527082 |
T |
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| Q |
590 |
cagaacgaggcagtgatgttattat |
614 |
Q |
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| T |
39527081 |
cagaacgaggcagtgatgttattat |
39527057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 616
Target Start/End: Complemental strand, 37852992 - 37852921
Alignment:
| Q |
545 |
ggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacgaggcagtgatgttattattg |
616 |
Q |
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| T |
37852992 |
ggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggtagtgatgttataattg |
37852921 |
T |
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